| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,946,448 – 20,946,551 |
| Length | 103 |
| Max. P | 0.513106 |
| Location | 20,946,448 – 20,946,551 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.68 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -20.53 |
| Energy contribution | -20.28 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20946448 103 - 22407834 UCCAUCUCAUGGUUGGAUUUCUUGUGGUACAAUUAUGAAUGCCACUUUCAAGUGCAUAACAAUGACCGGACCAUUCCGUCCGAGAUCCAAGC---UCGAGGCU---CCA ....((((..(.(((((((((....(((...(((....((((.(((....)))))))...))).)))((((......))))))))))))).)---..))))..---... ( -30.00) >DroSec_CAF1 390 106 - 1 UCCAUCUCAUGGUUGGAUUUCUUGUGGUACAAUUAUGAAUGCCACUUGCAAGUACAUAACAAUGACCGGACCACUCCGUCCGAGAUCCAAGC---UCGAGGCUCCUCCA ....((((..(.(((((((((....(((....(((((..(((.....)))....))))).....)))((((......))))))))))))).)---..))))........ ( -29.30) >DroSim_CAF1 467 106 - 1 UCCUUCUCAUGGUUGGAUUUCUUGUGGUACAAUUAUGAAUGCCACUUGCAAGUGCAUAACAAUGACCGGACCAUUCCGUCCGAGAUCCAAGC---UCGAGGCUCCUCCA ....((((..(.(((((((((..((((((..........)))))).(((....)))...........((((......))))))))))))).)---..))))........ ( -30.30) >DroEre_CAF1 9056 106 - 1 UGCAUCUCAUGGUUGGAUUUCUUGUGGCGCAAUUAUGAAUGCCACUUGCAAGUGCAUAACAAUGGCCGGACCAUUUCGUCCGAGAUCCAGUCGAGGCGAGGCU---CCA .((.((((.((..((((((((....(((.((.(((((..(((.....)))....)))))...)))))((((......))))))))))))..)).)).)).)).---... ( -33.00) >DroYak_CAF1 10900 103 - 1 UCCAUCUCAUGGUUGGAUUUCUUGUGGCACAAUUAUGAAUGCCACUUGCUAGUGCAUAACAAUGACCGGACCAUUUCGUCCGAGAUCCAAGC---UCGAAGCU---CCA ......((..(.(((((((((..((((((..........)))))).(((....)))...........((((......))))))))))))).)---..))....---... ( -29.10) >DroAna_CAF1 34421 91 - 1 UUCAUUUAAGGAUAGGGUUUUAUGUGGCACAAUUAUGAAUGCCACUUGCAAGUGCAUAACAAUGACCAGGCC-----GGACAUGAUCUGA----------CCU---CCA .........(((...((((....((((((..........)))))).(((....))).......)))).((.(-----(((.....)))).----------)))---)). ( -21.50) >consensus UCCAUCUCAUGGUUGGAUUUCUUGUGGCACAAUUAUGAAUGCCACUUGCAAGUGCAUAACAAUGACCGGACCAUUCCGUCCGAGAUCCAAGC___UCGAGGCU___CCA ............(((((((((..((((((..........))))))......................((((......)))))))))))))................... (-20.53 = -20.28 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:13 2006