Locus 757

Sequence ID 2L_DroMel_CAF1
Location 2,170,509 – 2,170,614
Length 105
Max. P 0.744609
window1245

overview

Window 5

Location 2,170,509 – 2,170,614
Length 105
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 88.54
Mean single sequence MFE -33.67
Consensus MFE -26.66
Energy contribution -26.91
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.79
SVM decision value 0.46
SVM RNA-class probability 0.744609
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2170509 105 - 22407834
ACAGAAACGGAGAUUCUGGCUCGGAUUCCCGGGCCGCAGAUGGAG-ACUCUGCU------------UGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU
........((((.....(((((((....)))))))(((((.(...-.)))))).------------..)))).............(((((((....(((....)))...))))))).. ( -35.60)
>DroSec_CAF1 13407 106 - 1
ACAGAAACGGAGAUUCUGGCUUGGAUUCCCGGGCCGCAGAUGGGGUACUCUGCU------------UGCUCCUCUAUUGUCGCCAAAUUCGUAAUUAGCAGCAGCUUAAAUGAGUUCU
........((((.....(((((((....)))))))(((((.(.....)))))).------------..)))).............(((((((....(((....)))...))))))).. ( -30.20)
>DroEre_CAF1 14244 102 - 1
ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCCGCAGAUGGGCCACUCUG----------------CUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU
.......(((.((.((((...)))).)))))(((.(((((.((((......)----------------))).))...))).))).(((((((....(((....)))...))))))).. ( -28.90)
>DroYak_CAF1 14959 118 - 1
ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCAGCAGAUGGAGCACUCUGCUCCGCUGCUUCGCUGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU
..((((.(((.((.((((...)))).)))))((.(((((.((((((.....)))))))))))))((((((.((..(((((..........))))).)).)))))).........)))) ( -40.00)
>consensus
ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCCGCAGAUGGAGCACUCUGCU____________UGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU
.......(((.((.(((.....))).)))))(((.((((..((((((...................))))))....)))).))).(((((((....(((....)))...))))))).. (-26.66 = -26.91 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:54 2006