Locus 756

Sequence ID 2L_DroMel_CAF1
Location 2,167,739 – 2,167,836
Length 97
Max. P 0.519700
window1244

overview

Window 4

Location 2,167,739 – 2,167,836
Length 97
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 81.94
Mean single sequence MFE -33.95
Consensus MFE -21.51
Energy contribution -21.32
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.63
SVM decision value -0.03
SVM RNA-class probability 0.519700
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2167739 97 + 22407834
CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUUAUGCUUGCCCCA----AGCUGGCGGGGAUGCCAACGAGG--------------GGCAGUGGACA
..((((((.............))))))..(((((....)))))..........(((.(((((.----.(.(((((....))))).)..))--------------))))))..... ( -31.32)
>DroSec_CAF1 9406 97 + 1
CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAGGAAUUUUAUGUUUGCCCCA----AGCUGGCGGGGAUGCCAACGAGG--------------GGCAGUGGACA
..((((((.............)))))).((((((....))))))........((((((((((.----.(.(((((....))))).)..))--------------))))...)))) ( -34.82)
>DroEre_CAF1 9749 115 + 1
CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCUUUAUAUCGAAAGGGGUUGCCAACGAGGGGGCAGAAAAAGGGGCCAGUGGACA
..((((((.............))))))..(((((....))))).........(((((((((((((...((....))..(((((........)))))..))))))))....))))) ( -32.92)
>DroYak_CAF1 9784 114 + 1
CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCU-UAUACCGAAAGGGGUUGCCAACAAGGAGCAGCAAAAAGGGGGCAGUGGACA
..((((((.............)))))).(..(((((....(((((.........)))))((((-(...((....)).((((((......).)))))...))))))))))..)... ( -36.72)
>consensus
CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCA____AGCGAAAGGGGAUGCCAACGAGG______________GGCAGUGGACA
....................(((((((..(((((....)))))...............((((............))))...)))))))........................... (-21.51 = -21.32 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006