Locus 7520

Sequence ID 2L_DroMel_CAF1
Location 20,861,818 – 20,861,922
Length 104
Max. P 0.792530
window12086

overview

Window 6

Location 20,861,818 – 20,861,922
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.18
Mean single sequence MFE -21.88
Consensus MFE -16.80
Energy contribution -16.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.59
SVM RNA-class probability 0.792530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20861818 104 + 22407834
UUUUCACCACGUUUUCACAUCAAACAACCUUAGA----------------ACAUUGUAAUUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA
...(((..((((((.......)))).........----------------....((((((..........)))))).))..)))....((((((((((....))))))))))........ ( -21.00)
>DroSec_CAF1 42009 104 + 1
UUUUCACCACGUUUUCACACCAAACAACCUGAAC----------------ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA
...(((..((((.((((............)))).----------------))..(((((............))))).))..)))....((((((((((....))))))))))........ ( -22.20)
>DroSim_CAF1 53106 104 + 1
UUUUCACCAUGUUUUCACACCAAACAGCAUUAGC----------------ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA
..(((...(((...(((.........((....))----------------....(((((............))))).....))).)))((((((((((....)))))))))).....))) ( -22.30)
>DroEre_CAF1 52709 88 + 1
--------AAGUUUUCACAUCAAGAAACCU------------------------GGUAACUCACCUCAUUAUUGCACGUUUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACACGAA
--------.....(((..(((((((.....------------------------.((((............))))...)))))))...((((((((((....)))))))))).....))) ( -20.90)
>DroYak_CAF1 44045 116 + 1
UUUU----AAGUUUUCACAUAAAAAAACCUUAGUAUUUGGCAUUAAUAGCUCCUUGAAACUCACCUCAUUAUUGCACGUUUUAAUCAUGAGCAGCGUGGGCUCAUGCUGCUCCACCCGAA
..((----(((((((........)))).)))))..(((((........((....(((........))).....)).............((((((((((....))))))))))...))))) ( -23.00)
>consensus
UUUUCACCAAGUUUUCACAUCAAACAACCUUAGC________________ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA
........................................................................................((((((((((....))))))))))........ (-16.80 = -16.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:49 2006