Locus 752

Sequence ID 2L_DroMel_CAF1
Location 2,153,622 – 2,153,742
Length 120
Max. P 0.781330
window1238

overview

Window 8

Location 2,153,622 – 2,153,742
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.11
Mean single sequence MFE -33.33
Consensus MFE -20.48
Energy contribution -20.93
Covariance contribution 0.45
Combinations/Pair 1.33
Mean z-score -1.69
Structure conservation index 0.61
SVM decision value 0.56
SVM RNA-class probability 0.781330
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2153622 120 - 22407834
AUCUCGUAACCGUCGUUCAACGUCACUAUGCGUUUUUGAGCGUCCACCUUCUUCACAGAGAAACCUUGAGCGACGGCAAUCCCUCCAUUUGCAUUAUCAUCCAGAUCCUCGGGGUCAAUG
.........(((((((((((.((......(((((....))))).....(((((....))))))).)))))))))))..(((((...(((((.((....)).)))))....)))))..... ( -28.50)
>DroVir_CAF1 7606 120 - 1
AUCUGAUAGCCGUCGUUCAAUGUUACAAUGCGUUUCUGUGCAUCAACUUUCUUAACGGCGAAACCUUGAGCGACGGCUAUGCCGCCGUUUACGCUGUCUUGAAGCUUCUCGGGAUCGACA
.....(((((((((((((((.(((...(((((......)))))......((........))))).)))))))))))))))....(((.....(((.......)))....)))........ ( -35.20)
>DroGri_CAF1 7370 120 - 1
AUCUGAUAGCCGUCGUUCAAUGUUGCAAUGCGAUUCUGUGCAUCGAUCUUCUUCACGGCAAAACCUUGAGCGACGGCUAUGCCACCAUUUACACUCUCGUCCAGCUUCUCUGGGUCCACA
.....(((((((((((((((..((((.(((((......))))).((......))...))))....)))))))))))))))...................(((((.....)))))...... ( -37.00)
>DroWil_CAF1 7910 120 - 1
AUUUGAUAGCCGUCGUUCAAUGUCACAACGCGAUUCUGUGCAUCCACUUUCUUUACGGCGAAACCUUGAGCAACGGCUAUGCCACCUUUUACGCUGUCCUCCAGCUUUUCAGGAUCCAUG
.....((((((((.((((((.((..(..((..(....(((....))).....)..))..)..)).)))))).))))))))....(((.....((((.....)))).....)))....... ( -30.40)
>DroAna_CAF1 10193 120 - 1
AUCUUAUAGCCAUCGUUUAGCGUCACAACGCGCUUUUGGGCGUCCACUUUCUUAACGGCGAAACCCUGGGCAACGGAUAUUCCACCAUUGGUGCUGUCCGCCAGGUUCUCUGGAUCUACG
((((...((((..((...(((((......)))))..))((((((((.((((........))))...)))))...(((((...((((...)))).)))))))).))))....))))..... ( -32.80)
>DroPer_CAF1 8191 120 - 1
AUCUUAUAGCCGUCGUUCAAUGUCACAGUGUGAUUCUGGGCAUCCACCUUCUGCACUGAGAAUCCUUGUGCGACGGCUAUACCACCAUUUACACUCUCCUCAAGCUUUUCGGGAUCCACA
....((((((((((((.(((..((.((((((((...(((....)))...)).)))))).))....))).))))))))))))...............((((..........))))...... ( -36.10)
>consensus
AUCUGAUAGCCGUCGUUCAAUGUCACAAUGCGAUUCUGUGCAUCCACCUUCUUCACGGCGAAACCUUGAGCGACGGCUAUGCCACCAUUUACACUGUCCUCCAGCUUCUCGGGAUCCACA
.....(((((((((((((((.((....((((........)))).....(((........))))).)))))))))))))))........................................ (-20.48 = -20.93 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006