Locus 751

Sequence ID	2L_DroMel_CAF1
Location	2,149,466 – 2,149,613
Length	147
Max. P	0.832144

overview

Window 6

Location	2,149,466 – 2,149,583
Length	117
Sequences	6
Columns	117
Reading direction	reverse
Mean pairwise identity	78.01
Mean single sequence MFE	-41.52
Consensus MFE	-25.59
Energy contribution	-26.48
Covariance contribution	0.89
Combinations/Pair	1.26
Mean z-score	-1.33
Structure conservation index	0.62
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2149466 117 - 22407834
CGUAGGGUCAGUGUUAUUUCUCCCAUGGCUAAGACACAACCAUGCCGGCAGUUAAUAUCGAUGGUGUCAGUUUUUGCCAGCAGUUGCGGCAGCACCACAGCGGCCAUGUACUCGGGC
.((((((..((......))..)))((((((............(((.(((((...((((.....))))......))))).)))((((.((.....)).)))))))))).)))...... ( -29.70)
>DroVir_CAF1 3454 117 - 1
CGCAGCGCCAGGGUUAUCUCGCCCAUGGCCAAAACACAGCCAUGACGAGCGUUCACAUCAAUCGUUUCGGUCUUGGCCAAGAGCUGGGGCAUAACCACAGCGGCCAUGUACUCUGGC
......((((((((.........(((((((........((((.((((((((...........)))))..))).)))).....((((((......)).))))))))))).)))))))) ( -45.20)
>DroWil_CAF1 3411 117 - 1
CGCAGAGCCAAAGUAAUUUCACCCAUGGCCAAGACACAACCAUGACGAGAAUUAACAUCUAUGGUGUCGGUUUUGGCCAAUAAUUGUGGUAGCACCACCGCGGCCAUAUACUCUGGC
......((((.((((..........((((((((((...(((((((.(........).)).)))))....)))))))))).....((((((.((......)).)))))))))).)))) ( -40.30)
>DroMoj_CAF1 3490 117 - 1
CUUAGGGCCAGCGUUAUCUCGCCCAUGGCCAGCACGCAGCCAUGCCUUGCGUUCACGUCGAUCGUCUCCGUCUUGGCCAAGAGUUGAGGCAGGACAACGGCCGCCAUGUACUCGGGU
....((((.((......)).))))..((((.(((.(((....)))..)))(((((((.....)))....((((..((.....))..)))).))))...))))(((.((....))))) ( -37.30)
>DroAna_CAF1 4706 117 - 1
CUCAGGGCCAGGGUGAUCUCUCCCAUGGCCAGGACACAACCAUGUCGGCAGUUGAUGUCAAUGGUAUCCGUUUUGGCCAAGAGCUGCGGCAACACCACUGCCGCCAUAUAUUCCGGC
(((.(((..((((....))))))).((((((((((...(((((...((((.....)))).)))))....)))))))))).)))..((((((.......))))))............. ( -43.00)
>DroPer_CAF1 3391 117 - 1
CGGACGGCCAGGGUGAUUUCACCCAUGGCCAGGACACAACCAUGCCGACUGUUGAUGUCGAUGGUGUCCGUUUUGGCCAGGAGUUGAGGCAGCACAACGGCCGCCAUAUACUCUGGC
(((((((((((((((....))))).)))))........(((((..((((.......)))))))))))))).....(((((.(((...(((.((......)).)))....)))))))) ( -53.60)
>consensus
CGCAGGGCCAGGGUUAUCUCACCCAUGGCCAAGACACAACCAUGCCGACAGUUAACAUCGAUGGUGUCCGUUUUGGCCAAGAGUUGAGGCAGCACCACAGCCGCCAUAUACUCUGGC
......(((.((((...........((((((((((...(((((.................)))))....))))))))))........(((.((......)).)))....)))).))) (-25.59 = -26.48 +   0.89)

alignment

secondary structure

dotplot

Window 7

Location	2,149,503 – 2,149,613
Length	110
Sequences	6
Columns	110
Reading direction	reverse
Mean pairwise identity	76.67
Mean single sequence MFE	-38.08
Consensus MFE	-20.33
Energy contribution	-20.33
Covariance contribution	0.00
Combinations/Pair	1.35
Mean z-score	-1.96
Structure conservation index	0.53
SVM decision value	0.72
SVM RNA-class probability	0.832144
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2149503 110 - 22407834
ACUUGGGGAUCACUCUUUUCCUCUAGUUUCCGUAGGGUCAGUGUUAUUUCUCCCAUGGCUAAGACACAACCAUGCCGGCAGUUAAUAUCGAUGGUGUCAGUUUUUGCCAG
...((((((.((((....(((((........).))))..)))).....)).))))((((.(((((...(((((..((..(.....)..)))))))....))))).)))). ( -26.50)
>DroPse_CAF1 3425 110 - 1
ACGGCUGGAUCACUGGCCAUUUCCAGCUUGCGGACGGCCAGUGUGAUUUCACCCAUGGCCAGGACACAACCAUGCCGACUGUUGAUGUCGAUGGUGUCCGUUUUGGCCAG
..((.((((.((((((((...(((.......))).))))))))....)))).)).((((((((((...(((((..((((.......)))))))))....)))))))))). ( -48.50)
>DroEre_CAF1 3625 110 - 1
ACUUGGGGAUCACUCUUUUCCUCCAGCUUGCGCAGGGCCAGUGUUAUUUCUCCCAUGGCCAAGACACAGCCAUGCCGGCAGUUAAUAUCGAUGGUGUCAGUUUUGGCCAG
...((((((.((((....((((...((....))))))..)))).....)).))))((((((((((...(((((..((..(.....)..)))))))....)))))))))). ( -33.70)
>DroWil_CAF1 3448 110 - 1
GUUGCACCUUUAGAGUCCAGCUCCAGUUGCCGCAGAGCCAAAGUAAUUUCACCCAUGGCCAAGACACAACCAUGACGAGAAUUAACAUCUAUGGUGUCGGUUUUGGCCAA
((.(((.((...(((.....))).)).))).))......................((((((((((...(((((((.(........).)).)))))....)))))))))). ( -29.70)
>DroAna_CAF1 4743 110 - 1
ACAGAGUUCUCACUCUUCUGCUCCAAAUUCCUCAGGGCCAGGGUGAUCUCUCCCAUGGCCAGGACACAACCAUGUCGGCAGUUGAUGUCAAUGGUAUCCGUUUUGGCCAA
..((((...(((((((...((((...........)))).))))))).))))....((((((((((...(((((...((((.....)))).)))))....)))))))))). ( -38.20)
>DroPer_CAF1 3428 110 - 1
AUGGCUGGAUCACUGGCCAUUUCCAGCUUGCGGACGGCCAGGGUGAUUUCACCCAUGGCCAGGACACAACCAUGCCGACUGUUGAUGUCGAUGGUGUCCGUUUUGGCCAG
.((((..((...((((......))))...((((((((((((((((....))))).)))))........(((((..((((.......)))))))))))))))))..)))). ( -51.90)
>consensus
ACUGCGGGAUCACUCUCCACCUCCAGCUUCCGCAGGGCCAGUGUGAUUUCACCCAUGGCCAAGACACAACCAUGCCGACAGUUAAUAUCGAUGGUGUCCGUUUUGGCCAG
...(((((....)))))......................................((((((((((...(((((..(((.........))))))))....)))))))))). (-20.33 = -20.33 +   0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:45 2006