| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,810,531 – 20,810,651 |
| Length | 120 |
| Max. P | 0.970091 |
| Location | 20,810,531 – 20,810,651 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -34.62 |
| Consensus MFE | -31.10 |
| Energy contribution | -31.23 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.970091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20810531 120 + 22407834 UGACGCAUCGUGUUUUGGUAACAGGAAAGCAUAAAAGCGAGAAGAGCACCAAUGUGCGGCACUCUGCUGCACAAUGGCCGCGAAACAAAAGAACAAGGCACGAAGAAAAUGUGUAAACCG ..(((((((((((((((...........((......)).......((.(((.((((((((.....)))))))).)))..))............))))))))))......)))))...... ( -37.90) >DroSec_CAF1 33544 120 + 1 UGACGCAUCGUGUUUUGGUAACAGGAAAGCAUGAAAGCGAGAAGAGCACCAAUGUGCGGCACUCUGCGGCACAAUGGCCGCGAAACAAAAGAACAAGGCACGAAGAAAAUGUGUAAACCG ..(((((((((((((((...........((......)).......((.(((.(((((.((.....)).))))).)))..))............))))))))))......)))))...... ( -35.80) >DroSim_CAF1 37921 120 + 1 UGACGCAUCGUGUUUUGGUAACAGGAAAGCAUGAAAGCGAGAAGAGCACCAAUGUGCGGUACUCUGCGGCACAAUGGCCGCGAAACAAAAGAACAAGGCACGAAGAAAAUGUGUAAACCG ..(((((((((((((((...........((......))(((....((((....))))....)))((((((......))))))...........))))))))))......)))))...... ( -35.30) >DroEre_CAF1 36098 119 + 1 UGACGCAUCGUGUUUUGGUAACAGGAAAGCAUAAA-ACGAGAAAAGCACCAAUGUGCGGCACUCUGUGGCCCAAUCGCCACGAAACAAAAGAACAAGGCACGAAGAAAAUAUGUAAACCG .......((((((((((..................-..(((....((((....))))....)))((((((......))))))...........))))))))))................. ( -29.50) >consensus UGACGCAUCGUGUUUUGGUAACAGGAAAGCAUAAAAGCGAGAAGAGCACCAAUGUGCGGCACUCUGCGGCACAAUGGCCGCGAAACAAAAGAACAAGGCACGAAGAAAAUGUGUAAACCG ..(((((((((((((((.....................(((....((((....))))....)))((((((......))))))...........))))))))))......)))))...... (-31.10 = -31.23 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:33 2006