Locus 750

Sequence ID 2L_DroMel_CAF1
Location 2,148,179 – 2,148,276
Length 97
Max. P 0.552399
window1235

overview

Window 5

Location 2,148,179 – 2,148,276
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -34.58
Consensus MFE -16.99
Energy contribution -16.77
Covariance contribution -0.22
Combinations/Pair 1.25
Mean z-score -1.78
Structure conservation index 0.49
SVM decision value 0.04
SVM RNA-class probability 0.552399
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2148179 97 - 22407834
CAGGAAAGCAGCCAUGCUGCUGCAUGUGUCGUUGGAGGACACAUAAAGCUGGAUGAGCUCGAAGAUGCGAUCCAUCUUGGUG---UUCUUCGACUGA----------ACA
.......(((((......))))).(((...((((((((((((...(((.(((((..((........)).))))).))).)))---)))))))))...----------))) ( -37.70)
>DroPse_CAF1 2090 100 - 1
CAGAUAGGCGGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUUGCAUAGCUCAAAGAUGCGCUCCAUUUUGGUGGAUUUGUGGGACUCA----------ACA
..((((((((((......))))).).))))(((((((....)))..((((..((..((........))..(((((....)))))..))..)).))))----------)). ( -29.60)
>DroGri_CAF1 2078 106 - 1
UAAAUAGGCAGCCAUGUUGCUGCAAGUGUCAUUCGUGGAGGCAUACAGCUUGCACAGCUCGAAGAUGCGUUCCAUUUUGGUU---AUCGCCGGCGGCAAGCUGGUCG-AA
.......(((((......)))))..(((((.((....))))))).((((((((...((.((..((((....((.....)).)---)))..)))).))))))))....-.. ( -34.50)
>DroEre_CAF1 2302 97 - 1
CAGGAAUGCAGCCAUGCUGCUGCAGGUGUCGUUGGAGGACACAUAAAGCUGGAUCAGCUCAAAGAUGCGAUCCAUCUUGGUG---UUCUUCGGCUGG----------ACA
......((((((......))))))..((((((((((((((((...(((.((((((.((........)))))))).))).)))---)))))))))..)----------))) ( -41.70)
>DroAna_CAF1 2333 97 - 1
CAGGUAAGCAGCCAUGCUACUGCAUGUGUCGUUGGUGGAGACAUAGACCUGGAUCAGUUCGUAGAUGCGUUCCAUUUUGGUA---GUCUUGGACUGA----------AUG
(((((.(((.(((((((....))))).)).))).(((....)))..)))))..((((((((.((((.....((.....))..---))))))))))))----------... ( -34.40)
>DroPer_CAF1 2093 100 - 1
CAGAUAGGCGGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUUGCAUAGCUCAAAGAUGCGCUCCAUUUUGGUGGAUUUGUGGGACUCA----------ACA
..((((((((((......))))).).))))(((((((....)))..((((..((..((........))..(((((....)))))..))..)).))))----------)). ( -29.60)
>consensus
CAGAUAGGCAGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUGGAACAGCUCAAAGAUGCGAUCCAUUUUGGUG___UUCUUCGACUGA__________ACA
((((...(((((......)))))..(((((.((((((....)))..((((.....))))))).))))).......))))............................... (-16.99 = -16.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006