| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 264,411 – 264,522 |
| Length | 111 |
| Max. P | 0.519196 |
| Location | 264,411 – 264,522 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.01 |
| Mean single sequence MFE | -37.92 |
| Consensus MFE | -25.71 |
| Energy contribution | -25.13 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 264411 111 - 22407834 --GGGGCCCAUCAUGGUAUCGCUGCCAAAGAGCACCA---G---AAUAUCGGUGGCUCUGCAAUAAAACAAAAUCAAAUACGUCCGCUGCAAUUGCAGGCAGCUGGACGUGGCUAUGCU --(..(((......)))..)((.(((..((((((((.---.---......))).)))))....................(((((((((((........))))).)))))))))...)). ( -38.70) >DroPse_CAF1 83647 113 - 1 GAGGAGCCC---ACGGCGUGGCGGCCAAGGAGCAUCAUCAGCAUCAUGGCGGGGGCA---CUAUCAAACAGAAUCAGAUACGUCCUUUGCAACUGCAGGCGGCAGGACGUGGCUACGUC .........---..((((((((.((((.(..((.......))..).)))).......---..................((((((((((((........)))).)))))))))))))))) ( -36.20) >DroSim_CAF1 69390 111 - 1 --GGGGCCCAUCAUGGAAUCGCUGCCAAAGAGCACCA---G---AAUAUCGGUGGCUCUGCAAUAAAACAAAAUCAAAUACGUCCGCUGCAAUUGCAGGCAGCUGGGCGUGGCUAUGCU --((..((......))..))((.(((..((((((((.---.---......))).)))))....................(((((((((((........))))).)))))))))...)). ( -37.70) >DroEre_CAF1 62332 111 - 1 --GGGGCCCACCAUGGAAUUGCUGCCAAAGAGCACCA---G---AAUAUCGGGGGCUCUGCAAUCAAACAAAAUCAAAUACGUCCGCUGCAACUGCAGGCAGCUGGGCGUGGCUAUGCU --(((((((.(((((...(((.(((......))).))---)---..))).)))))))))...................((((((((((((........))))).)))))))........ ( -38.10) >DroYak_CAF1 60153 111 - 1 --GGGCCCCACCAUGGAAUCGCUGCCAAAGAGCACCA---C---AAUAUCGGUGGCUCUGCCAUCAAACAAAAUCAAAUACGUCCGCUGCAACUGCAGGCAGCCGGGCGUGGCUAUGCC --((......))........((.(((..((((((((.---.---......))).)))))....................(((((((((((........)))).))))))))))...)). ( -36.90) >DroPer_CAF1 84308 113 - 1 GAGGAGCCC---ACGGCGUGGCGGCCAAGGAGCAUCAUCAGCAUCAUGGCGGGGGCA---CCAUCAAACAGAAUCAGAUACGUCCGUUGCAACUGCAGGCGGCAGGACGUGGCUACGUC ((((.((((---.((.(((((..((....((......)).)).))))).)).)))).---)).))..........((.((((((((((((........))))).))))))).))..... ( -39.90) >consensus __GGGGCCCA_CAUGGAAUCGCUGCCAAAGAGCACCA___G___AAUAUCGGGGGCUCUGCAAUCAAACAAAAUCAAAUACGUCCGCUGCAACUGCAGGCAGCUGGACGUGGCUAUGCC ....((((............((..((........................))..)).......................(((((((((((........))))).))))))))))..... (-25.71 = -25.13 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:07 2006