Locus 7499

Sequence ID 2L_DroMel_CAF1
Location 20,801,959 – 20,802,079
Length 120
Max. P 0.655847
window12054

overview

Window 4

Location 20,801,959 – 20,802,079
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.12
Mean single sequence MFE -26.97
Consensus MFE -16.04
Energy contribution -16.04
Covariance contribution -0.00
Combinations/Pair 1.20
Mean z-score -1.81
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.655847
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20801959 120 + 22407834
AAGGGACAAUGGAUUUUUAAUCGUGAAUCCUUUGGGCAGGAAUAAUACUAUUCUUGAGAUUUUUUGUUUUGUCUGGCCAGCUUUUUGUCCAGUUUUGCCUGCUGUGCGGCAGCCUUCUUC
...((((((.((((((........)))))).((((.((((((((....)))))..(((((.....)))))..))).))))....))))))......(.(((((....))))).)...... ( -31.10)
>DroSec_CAF1 25222 120 + 1
AAGGGACAAUGGAUUUUUAAUCGUGAAUCCUUUGGGCAGGAAUGAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC
...((((((.((((((........))))))....(((((((..((((....((....)).....))))...)))))))......))))))....(((((.((...)))))))........ ( -31.90)
>DroSim_CAF1 28805 120 + 1
AAGGGACAAUGGAUUUUUAAUCUUGAAUCCUUUGGGCAGGAAUAAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC
...((((((.((((((........))))))....(((((((..((((....((....)).....))))...)))))))......))))))....(((((.((...)))))))........ ( -31.50)
>DroEre_CAF1 28650 98 + 1
AA----------------------GGAUUCUCUUGGCAGGAAUGACACUAUUCUUCAGAUUUUUUGUUUUUUCUGGCCAGCUUUUUAUCCAAUUUCGCCUGCUUUGCGGCAGCCUUCUUC
..----------------------((((....((((((((((.((((....((....)).....)))).))))).)))))......))))......(.(((((....))))).)...... ( -22.10)
>DroYak_CAF1 26183 96 + 1
------------------------UUAUACUUCGGGCAAGAAUGGCACUAUUCCUCAGCUUUUUUGUUUUUUCUUGCCAGCUUUUUAUCCAAUUUUGCCUGCUUUGCGGCAGCUUUCUGC
------------------------..........((((((((.((((.................))))..))))))))................(((((.((...)))))))........ ( -18.23)
>consensus
AAGGGACAAUGGAUUUUUAAUC_UGAAUCCUUUGGGCAGGAAUGAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC
..................................(((((((..((((....((....)).....))))...)))))))................(((((.((...)))))))........ (-16.04 = -16.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:20 2006