Locus 7497

Sequence ID 2L_DroMel_CAF1
Location 20,799,831 – 20,799,950
Length 119
Max. P 0.662186
window12051

overview

Window 1

Location 20,799,831 – 20,799,950
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.89
Mean single sequence MFE -31.14
Consensus MFE -22.79
Energy contribution -22.71
Covariance contribution -0.08
Combinations/Pair 1.19
Mean z-score -1.87
Structure conservation index 0.73
SVM decision value 0.27
SVM RNA-class probability 0.662186
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20799831 119 - 22407834
UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUGACUGGUGCAACAGGGAACUGUGCCAAAAACUCACAAUCAAAAUGGGUUUA-AUUUGUGUUAAUCAG
.....(((....(((((((((((((((.((((((...(((....))))))))).))))(.(((.(((....)))))))...)))))).((((......))))..-..)))))....))). ( -34.80)
>DroSec_CAF1 23099 119 - 1
UGAGAUGAAAAUCGCAAUGAGUUCAGUGGCUACAAUUUUCGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCGCAAUCAAAAUGGCUUCA-AUUUGUGUAAAUCAG
((((((....)))((.(..((((....(((((.....(((....)))..(((.((((...(((.(((....)))))).....))))))).......)))))..)-)))..)))...))). ( -28.80)
>DroSim_CAF1 26683 119 - 1
UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUUACUGCUGCAACAGGGAACUGUGCCAAAAAGUCGCAAUCAAAAUGGGUUCA-AUUUGUGUAAAUCAG
.....(((....(((((((((..(((((((((((...(((....)))))))))))))...(((.(((....))))))....................)..))))-..)))))....))). ( -33.30)
>DroEre_CAF1 26568 119 - 1
UGAGAUGAAAAUCGCAGUGGGUUAAGUGGGUACAAUG-UUGCAAAGAAGUGCUGACUGGUGCAACAGGGAACUGUGCCAAAAAGGCACCAUCUAAAUGGGAUUACAUUGCUGUAAAUCAG
((((((....)))((((((.(((.....((((((.((-(((((....(((....)))..)))))))(....))))))).....))).((((....)))).....))))))......))). ( -34.50)
>DroYak_CAF1 24086 120 - 1
UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUAAAAUUUUUGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCACAAUCUAAAUGGGAUAAAGUUUGUGUAAAUCAG
.....(((....(((((...((((..(((((.........(((......)))(((((...(((.(((....)))))).....)))))..)))))....)))).....)))))....))). ( -24.30)
>consensus
UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCACAAUCAAAAUGGGUUCA_AUUUGUGUAAAUCAG
((.(((....))).)).(((...((((.((((((...(((....))))))))).))))..(((.(((....))))))........(((((.................)))))....))). (-22.79 = -22.71 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:17 2006