Locus 7492

Sequence ID 2L_DroMel_CAF1
Location 20,796,456 – 20,796,571
Length 115
Max. P 0.909459
window12042

overview

Window 2

Location 20,796,456 – 20,796,571
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.24
Mean single sequence MFE -34.01
Consensus MFE -32.05
Energy contribution -32.09
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.94
SVM decision value 1.07
SVM RNA-class probability 0.909459
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20796456 115 - 22407834
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77)
>DroSec_CAF1 19739 115 - 1
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77)
>DroSim_CAF1 23297 115 - 1
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77)
>DroEre_CAF1 23219 115 - 1
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUCCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.((.......)).))))))...))))))).)))))). ( -32.37)
>DroYak_CAF1 20726 120 - 1
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCAGCGGCCCCUUGGACCCGAUUGCCCGCUUCCCGAUUCCGGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((...............(((....)))...((.((....)).))..))))))).)))))). ( -36.37)
>consensus
GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU_____UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC
...((((((........(((((((.(..................).))))))).(((((((.((......)).................((.((....)).))..))))))).)))))). (-32.05 = -32.09 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:09 2006