Locus 749

Sequence ID 2L_DroMel_CAF1
Location 2,141,866 – 2,141,986
Length 120
Max. P 0.500000
window1234

overview

Window 4

Location 2,141,866 – 2,141,986
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -41.30
Consensus MFE -27.72
Energy contribution -27.70
Covariance contribution -0.02
Combinations/Pair 1.32
Mean z-score -1.54
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2141866 120 - 22407834
CAGCCAUUUGAAGUUAGUGGGAAAUCUGUAUGAUCAGUGCCAAGACACACUCGUCCAGUUUGGUACGUUCCUAGGCUCCACCUAUUCUGUGGAUGAGUAUGUGGAGCGGUUGCCCUCGAU
(((((............(((((((((.....)))..((((((((((......)))....))))))).)))))).(((((((.(((((.......))))).))))))))))))........ ( -40.60)
>DroVir_CAF1 5927 120 - 1
CAGCCAUCUGAAGCUGGUGGGCAGUCUGUACGAUCAGUGCCAGGAUGCCUUGGUGCAGUUUGGCACAUUUCUGGGCUCCACCUAUUCGGUGGAUGAGUAUGUGGAACGCCUGCCAUCGAU
.(((........)))((..(((..((..((...(((((((((((.(((......))).))))))))..........((((((.....)))))))))...))..))..)))..))...... ( -45.70)
>DroGri_CAF1 4886 120 - 1
UAGCCAUCUGAAGCUGGUGGGCAGUCUGUAUGAUCAGUGCCAGGAUGCUUUGGUGCAGUUUGGCACAUUUCUGGGCUCCACUUAUUCGGUGGAUGAGUACGUGGAACGCUUGCCAUCAAU
.(((........)))((..(((.((((....((...((((((((.(((......))).))))))))...)).))))(((((.((((((.....)))))).)))))..)))..))...... ( -44.00)
>DroWil_CAF1 9462 120 - 1
UAGUCAUUUGAAAUUGGUCGGAAAUCUUUAUGAUCAAUGUCAGGAUACCUUAGUGCAAUUUGGUACCUUCUUGGGCUCUACCUAUUCGGUGGAUGAGUAUGUGGAGCGUUUGCCAUCGAU
..(((.(((((.((((((((..........)))))))).)))))................(((((((.....))(((((((.((((((.....)))))).)))))))...)))))..))) ( -33.20)
>DroMoj_CAF1 4795 120 - 1
UAGUCACUUGAAGCUUGUGGGCAGCUUGUAUGAUCAGUGCCAGGAUGCCCUGGUGCAGUUUGGCACAUUCUUGGGCUCCACUUAUUCGGUGGACGAGUAUGUCGAACGCCUUCCAUCAAU
..............(((((((..((...........(..(((((....)))))..).((((((((....((((...((((((.....))))))))))..))))))))))..)))).))). ( -39.20)
>DroAna_CAF1 4196 120 - 1
CAGCCACUUGAAGUUGGUGGGCAACCUGUACGAUCAGUGCCAGGACACAUUAGUUCAGUUUGGCACUUUUCUGGGGUCCACCUACUCGGUGGAUGAGUAUGUGGAGCGCCUGCCCUCGAU
..((((........))))(((((........((..(((((((((((......))))....)))))))..)).(((.(((((.((((((.....)))))).))))).).)))))))..... ( -45.10)
>consensus
CAGCCAUUUGAAGCUGGUGGGCAAUCUGUAUGAUCAGUGCCAGGAUACCUUGGUGCAGUUUGGCACAUUCCUGGGCUCCACCUAUUCGGUGGAUGAGUAUGUGGAACGCCUGCCAUCGAU
........(((...(((..(((..............((((((((..((....))....))))))))........(.(((((.((((((.....)))))).))))).))))..)))))).. (-27.72 = -27.70 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:42 2006