| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,141,628 – 2,141,737 |
| Length | 109 |
| Max. P | 0.695835 |
| Location | 2,141,628 – 2,141,737 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.54 |
| Mean single sequence MFE | -31.19 |
| Consensus MFE | -19.47 |
| Energy contribution | -17.95 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2141628 109 + 22407834 UCAGCUGCGUAGCUUCCAAAUACUUCUGGAGCUUUUGCGUCGUGGUGAGCUUCUUGGCGUUAGGGUCAUCCUUGCGCAAUUGAUCAUAUUUUUGCUGUAAG-AGGGAUUC---- .((((.(((.((((.(((........)))))))..)))......((((........((((.(((.....))).))))......))))......))))....-........---- ( -26.94) >DroVir_CAF1 5684 114 + 1 UCAACUGCGUGGCUUCCAGAUAUUUUUGUAGCUUUUGCGCCGUCGUCAGCUUCUUGGCAUUGGGAUCCGCCUUGCGCAGUUGAUCGUAUUUUUGCUGUCAAGCCAAAUUAAAAC (((((((((((((((((((...........((....))((((............)))).))))))...)))..))))))))))...((.(((.(((....))).))).)).... ( -33.50) >DroGri_CAF1 4640 114 + 1 UCAGUUGCGUGGCAUCCAGAUACUUUUGCAGCUUUUGUGUCGUUGUCAGCUUCUUAGCAUUGGGAUCCGCUUUGCGUAAUUGAUCAUAUUUUUGCUGCAAGCACAAAAUAGACA (((((((((((((((((.(((((.............))))).......(((....)))....))))..)))..))))))))))((.(((((((((.....))).)))))))).. ( -29.72) >DroEre_CAF1 3957 109 + 1 UCAGCUGCGUGGCUUCCAAAUACUUUUGCAGCUUUUGCGUCGUGGUAAGCUUCUUGGCAUUGGGAUCAGCUUUGCGCAAUUGAUCGUAUUUUUGCUGCAGG-AGGUAUUA---- ..((((....))))....((((((((((((((...((((((.(((((((((((((......))))..))).)))).))...)).)))).....)))))).)-))))))).---- ( -30.60) >DroWil_CAF1 9214 109 + 1 UCAAUUGUGUGGCCUCUAGAUAUUUCUGUAGCUUUUGUGUGGCCGUCAAUUUUUUGGCAUUUGGAUCAGCUUUACGUAGUUGAUCGUAUUUUUGCUAUAAG-GGGUGAAA---- .........(.(((((((((....)))..........((((((.(((((....))))).....((((((((......))))))))........))))))))-)))).)..---- ( -29.10) >DroAna_CAF1 3961 109 + 1 UCAGCUGCGUGGCCUCCAGAUACUUUUGCAGUUUCUGGACGGUGGUUAGCUUUUUCGCAUUGGGAUCCGCCUUACGUAGCUGAUCGUACUUUUGCUAAAAG-GAUUACAA---- ((((((((((((..((((((.(((.....))).)))))).(((((....(((.........)))..)))))))))))))))))..((((((((....))))-)..)))..---- ( -37.30) >consensus UCAGCUGCGUGGCUUCCAGAUACUUUUGCAGCUUUUGCGUCGUGGUCAGCUUCUUGGCAUUGGGAUCAGCCUUGCGCAAUUGAUCGUAUUUUUGCUGUAAG_AGGUAUUA____ (((((((((((((.(((.(((.........((....))...((((.........))))))).)))...)))..))))))))))............................... (-19.47 = -17.95 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:41 2006