| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,784,203 – 20,784,293 |
| Length | 90 |
| Max. P | 0.873323 |
| Location | 20,784,203 – 20,784,293 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 73.95 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -17.04 |
| Energy contribution | -16.43 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20784203 90 - 22407834 UGGCCAGAAACAACAAAGUGAAUGGCGAGGACGAUACCUCCGAUAACGGUACGUGCCAGGGGUGUCCUCAAAA---GGAGAAUUUUAAGCGAA---------------------- ..((((...((......))...))))((((((...(((.((....(((...)))....)))))))))))....---.................---------------------- ( -24.70) >DroSec_CAF1 7390 90 - 1 UGGCCAGCAACAACAAAGUGAAUGGUGAGGACGAUACGUCCGAUAACGGUACGUGCCAGGGGUGUCCUCAAAA---GAAGAAUUUUAAGCGAA---------------------- ..((((...((......))...))))((((((...(((((((....))).))))(((...)))))))))....---.................---------------------- ( -24.30) >DroSim_CAF1 7638 90 - 1 UGGCCAGCAACAACAAAGUGAAUGGCGAGGACGAUACGUCCGAUAACGGUACGUGCCAUGGGUGUCCUCAAAA---GGAUAAUUUUAAGCGAA---------------------- ..((((...((......))...))))((((((...(((((((....))).))))(((...)))))))))....---.................---------------------- ( -26.60) >DroEre_CAF1 7535 113 - 1 UGGCCAGCAACAACAAAGUGAAUGGCGAGGACGAUACGUCCGAUAACGGUUGGUGCCAGGGGUGUCCUC--AAAAAGGGGUCUUUGAAGAGAAGAACAGUUAUUUCACUGUGAAA ..((((...((......))...))))(((((((...(..(((((....))))).....)...)))))))--.........(((((.....)))))(((((......))))).... ( -29.60) >DroYak_CAF1 7911 108 - 1 UGGCCAGCAAUAACAAAGUGAAUGGCGAGGACGAUACGUCCGAUAACGGUAUGUGCCAGGGGUGUCCUCGAAAAAAGGGGUCUUUGCAGAGA-------UUAUUUCAAUUUUAAA ..((((...((......))...))))((((((...(((((((....))).))))(((...)))))))))((((.....((((((....))))-------)).))))......... ( -27.60) >DroAna_CAF1 7466 86 - 1 UGGCCAGCAACAAUAAAGUGAAUGGCGAGGAGGAUACGUCUGAUAAUGGUAACUGUCAAGGCGGUUUUUUAGA-------AAUUUUAUGAAGG---------------------- ..((((...((......))...))))..(((((((.(((((((((........)))).))))))))))))...-------.............---------------------- ( -17.90) >consensus UGGCCAGCAACAACAAAGUGAAUGGCGAGGACGAUACGUCCGAUAACGGUACGUGCCAGGGGUGUCCUCAAAA___GGAGAAUUUUAAGAGAA______________________ ..((((...((......))...))))(((((((.(((..(((....)))...)))(....).))))))).............................................. (-17.04 = -16.43 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:52 2006