Locus 747

Sequence ID 2L_DroMel_CAF1
Location 2,138,794 – 2,138,887
Length 93
Max. P 0.670127
window1232

overview

Window 2

Location 2,138,794 – 2,138,887
Length 93
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 76.87
Mean single sequence MFE -17.03
Consensus MFE -12.80
Energy contribution -13.67
Covariance contribution 0.87
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.75
SVM decision value 0.29
SVM RNA-class probability 0.670127
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2138794 93 - 22407834
UGUGAUGAUCAUUCAGUACAAGUCAAAGUACUGAAUGAUGAAA--AACCCCUGCAUGUAACUCAAAACCAAUCUUCUGGAGUCAAAAUAG---CCUGC
..((((.((((((((((((........))))))))))))....--......................(((......))).))))......---..... ( -20.80)
>DroSim_CAF1 1355 93 - 1
UGUGAUGAUCAAUCAGUACAAGCCAAAGUACUAAUUGAUAAAA--AACCCCUGAAUGGAACUCAAACCCAAUCUUCUGGAGUCAAAAUAG---CAUGC
..((((.((((((.(((((........))))).))))))....--..((...((.(((.........))).))....)).))))......---..... ( -16.60)
>DroEre_CAF1 1069 92 - 1
UGUGAUAAUCAUUCAGUAAAAGUCAAAAUACUGAUUGAUAGAA--AGCACCUGUA----ACUCAAAACCAAUCUUCUGAAGUCAAAAUCGCAACCUAU
((((((.((((.((((((..........)))))).))))....--..........----............((....)).......))))))...... ( -13.90)
>DroYak_CAF1 1050 92 - 1
UAUGAUGAUCAUUCAGUAA-AGUCAAAGUACUGAUUGAUAGAAGGAGCACGUGUA----UCUAACUCCACAUCUUCUGAAGUCAAUA-AGCCACCUAU
...((((((((.((((((.-........)))))).))))....((((........----.....)))).))))..............-.......... ( -16.82)
>consensus
UGUGAUGAUCAUUCAGUAAAAGUCAAAGUACUGAUUGAUAAAA__AACACCUGUA____ACUCAAAACCAAUCUUCUGAAGUCAAAAUAG___CCUAC
..((((.((((((((((((........))))))))))))................................((....)).)))).............. (-12.80 = -13.67 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:40 2006