| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,709,813 – 20,709,907 |
| Length | 94 |
| Max. P | 0.651548 |
| Location | 20,709,813 – 20,709,907 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -34.80 |
| Consensus MFE | -23.11 |
| Energy contribution | -23.78 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20709813 94 + 22407834 CCGCACAAAGUCGGGGCACCUUGACAAGCCCAGGCACGUCUUCGGCCGACAAUUGGCCAGAGAUGUUGGCCAAAAGAUGCUCGCAGUCGGGC-----------------UG .........((((((....)))))).(((((.(((((((((..((((((...))))))..))))))..)))....(((.......)))))))-----------------). ( -40.10) >DroSec_CAF1 32582 83 + 1 CCGCACAAAGUCGAGGCACCUUGACAAGCCCAGGCACGUCUUCCGCCGCCAAUUGGCCAGAGAUGUU-----------GCUCGCAGUCGGGC-----------------CC (((.((...((((((....))))))..((...((((((((((..((((.....))))..)))))).)-----------))).)).)))))..-----------------.. ( -31.10) >DroSim_CAF1 24086 94 + 1 CCGCACAAAGUCGGGGCACCUUGACAAGCCCAGGCACGUCUUCCGCCGCCAAUUGGCCAGAGAUGUUGGCCAAAAGAUGCUCGCAGUCGGGC-----------------CC .........((((((....))))))..((((.((((((((((..((((.....))))..)))))))..)))....(((.......)))))))-----------------.. ( -33.80) >DroEre_CAF1 28934 93 + 1 CCG-ACCAGGUCGGGGCACCUUGACAAGCCUAGGCACGUCUUCCGCCGACAAUUGGCCAGAGAUGUUGGCCAAAAGAUGCUCGGAGUCGGGC----------UG------- (((-((...((((((....))))))....(..((((((((.......)))..((((((((.....))))))))..).))))..).)))))..----------..------- ( -34.50) >DroYak_CAF1 33004 105 + 1 CCGCACAAAGUCGAGCCACCUUGACAAGCCUAGGCACGUCUUCCGCCGACAAUUGGCCAGAGAUGUUGGCCAAAAGAUGCUCGAAGUCGGUC------CUACUCGUGGCUC ............(((((((...(((..((....))..)))....((((((..((((((((.....))))))))..(.....)...)))))).------......))))))) ( -36.60) >DroAna_CAF1 34877 111 + 1 CCUGGCCAAGACGAAGCACCUUGACUAGCCUAGGCACGUCUUCGACAGCCAAUUGGCCAAAGAUGUUGGCCCAAAGAUGCUCGAAGCUGGGAAGCUCACUUCGUGUAACUU ..((((.((((((.(((.....).)).((....)).)))))).....))))...((((((.....))))))..(((.(((.(((((.((((...))))))))).))).))) ( -32.70) >consensus CCGCACAAAGUCGAGGCACCUUGACAAGCCCAGGCACGUCUUCCGCCGACAAUUGGCCAGAGAUGUUGGCCAAAAGAUGCUCGCAGUCGGGC_________________UC (((.((...((((((....)))))).......((((((((((..((((.....))))..)))))))..)))..............)))))..................... (-23.11 = -23.78 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:32 2006