Locus 7457

Sequence ID 2L_DroMel_CAF1
Location 20,697,497 – 20,697,601
Length 104
Max. P 0.535593
window11988

overview

Window 8

Location 20,697,497 – 20,697,601
Length 104
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.44
Mean single sequence MFE -20.02
Consensus MFE -11.47
Energy contribution -10.75
Covariance contribution -0.72
Combinations/Pair 1.21
Mean z-score -1.59
Structure conservation index 0.57
SVM decision value 0.00
SVM RNA-class probability 0.535593
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20697497 104 - 22407834
------UUAAAAUG-----UAAAUCCAUCUGCAACCUAUGUAUCUCAACUAUCUCUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC
------......((-----((........))))...........................-..(-(((((.((((((...(((...........)))..))))))))))))...... ( -19.00)
>DroPse_CAF1 25412 108 - 1
CCCGAGUUCAGGCC-----CUAAUGUAUCUCGAACCUA----UCUCAACUUGCAUUUAAUUCACAUUCGUCUGGCACUUUUGCUCUUCAUUUUCGCACUAUGCCAAUGAGUAAAAAC
..((((..((....-----....))...))))......----......................((((((.(((((....(((...........)))...)))))))))))...... ( -16.90)
>DroSec_CAF1 20483 104 - 1
------UUCAAAUU-----UAAAUCCAUCUGCAACCUAUGUAUCUCAACUAUCUCUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC
------........-----..........((((.....))))..................-..(-(((((.((((((...(((...........)))..))))))))))))...... ( -18.40)
>DroEre_CAF1 17809 100 - 1
------CCGAGAUG-----UAGAUCCAUCUGCAACCUA----UCUCAACUAUCUUUGAGU-CAG-CUCGCCUCGCAGUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUUGAAAC
------..((((((-----((((....)))))).....----)))).............(-(((-((((..(((((.(..(((...........)))..)))))).))))))))... ( -26.10)
>DroYak_CAF1 20623 105 - 1
------UUAAAAUGUAUGGUAAAUACAUCUGCAACCUA----UCUCAACUAUCUUUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAGAC
------.....((((((.....))))))..........----.........(((((....-..(-(((((.((((((...(((...........)))..))))))))))))))))). ( -22.10)
>DroPer_CAF1 25335 108 - 1
CCCGAGUUCAGGCU-----CUAAUGUAUCUCGAACCUA----UCUCAACUUGCAUUUAAUUCACAUUCGUCUGGCACUUUUGCUCUUCAUUUUCGCACUAUGCCAAUGAGUAAAAAC
...(((...(((.(-----(...........)).))).----.)))..................((((((.(((((....(((...........)))...)))))))))))...... ( -17.60)
>consensus
______UUCAAAUG_____UAAAUCCAUCUGCAACCUA____UCUCAACUAUCUUUGAAU_CAG_CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC
.................................................................(((((.(((((.(..(((...........)))..)))))))))))....... (-11.47 = -10.75 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:20 2006