| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,694,937 – 20,695,033 |
| Length | 96 |
| Max. P | 0.984757 |
| Location | 20,694,937 – 20,695,033 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 70.89 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20694937 96 + 22407834 AUUUUCGAUUGCUGGGCAGUUGGCGGAUUUUCCUUUUGGCCAAGAACUGGCCAGGCAGACGAC-GAAUCUUCUAGCCCGGCCACAGAGAGUCCGACC- ....((((((((...))))))))((((((((((((......)))...(((((.((((((.((.-...)).))).))).)))))..)))))))))...- ( -34.50) >DroSec_CAF1 18028 91 + 1 AUUUUCGAUUGCUGGGCAGUUGGCGGAUUUUCCUUUUGGACAAGAACUGGCCGCGAAGACGAC-GAAUCUUCUAGCCCGGCCACAGAGAUGC------ ..((((....(((((((.....((((....(((....)))((.....)).))))(((((....-...)))))..)))))))....))))...------ ( -29.70) >DroEre_CAF1 15521 85 + 1 --UUUCGCUUGCCGGGCUGCUGGCGGAUUUUCCUUUUGGC-CAGAACUGGCCAAGCAG---AC-GAAUCUUCUAACCCGGCAACGGAGAGCC------ --(((((.((((((((....(((.((((((..((((((((-((....)))))))).))---..-)))))).))).)))))))))))))....------ ( -38.10) >DroYak_CAF1 18134 88 + 1 AUUUUCGUUUGCUGGGCUGCUGGCUGAUUUUCCUUUUGGAAAAGAACUAGCCAAACAG---AC-AAAUCUUCUAGCUCGGCAACAGAGACUC------ ..((((..(((((((((((.((((((.((((((....))))))....))))))...((---(.-...)))..)))))))))))..))))...------ ( -30.70) >DroAna_CAF1 20394 91 + 1 ----UC--UUGUUAGU-UAGUGGUAGCUUUUCCUUUUAGACAAGAACCGGCCAGACAGACGGCCAGAUCUUCUAAGCCAGAAGACCAAAGCCAAACUC ----((--(((((.(.-.((..(......)..))..).)))))))...((((........)))).(.((((((.....)))))).)............ ( -20.80) >consensus AUUUUCGAUUGCUGGGCUGCUGGCGGAUUUUCCUUUUGGACAAGAACUGGCCAAGCAGACGAC_GAAUCUUCUAGCCCGGCAACAGAGAGCC______ ..((((..(((((((((...(((.((((((..(((((((...........))))).))......)))))).))))))))))))..))))......... (-16.28 = -16.68 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:19 2006