Locus 745

Sequence ID 2L_DroMel_CAF1
Location 2,134,095 – 2,134,201
Length 106
Max. P 0.905459
window1229

overview

Window 9

Location 2,134,095 – 2,134,201
Length 106
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 75.82
Mean single sequence MFE -32.43
Consensus MFE -19.12
Energy contribution -19.10
Covariance contribution -0.02
Combinations/Pair 1.29
Mean z-score -1.86
Structure conservation index 0.59
SVM decision value 1.04
SVM RNA-class probability 0.905459
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2134095 106 + 22407834
UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAGUAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGUUGACCUUCUGGC------
........--.((((..(((((..((...........((((....(((--(((....))--))))..((((....)))).))))......(....).))..))))).)))).------ ( -28.50)
>DroSec_CAF1 4723 106 + 1
UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAUAAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGGUGACCUUCUGGC------
........--.((((..((((..(((...........((((.....((--(((....))--)))...((((....)))).))))......(....).)))..)))).)))).------ ( -34.20)
>DroSim_CAF1 3069 106 + 1
UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAUAAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGGUGACCUUCUGGC------
........--.((((..((((..(((...........((((.....((--(((....))--)))...((((....)))).))))......(....).)))..)))).)))).------ ( -34.20)
>DroEre_CAF1 4138 106 + 1
UUAUAGUU-UUCCAGUUGGGUUGCUCGGAAAUCACCGUGCGAUUUCUU--GCUGAUAAG--CUGGUAUUCCAUUGGGAGUCGUAU-AGUUGGGAACUGGGUGACCUUCUGGC------
........-..((((..((((..(((((...((((..((((((((((.--(((....))--)(((....)))..)))))))))).-.).)))...)))))..)))).)))).------ ( -39.90)
>DroYak_CAF1 3070 94 + 1
UUAUAGUUUUUCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUUUCGCUGAUAAG--CUGGUAUUCCG----------------UUGGGAACUGGGUGACCUUCUGGC------
...........((((..((((..(((.(....((((((((((......))))......)--).))))((((.----------------...))))).)))..)))).)))).------ ( -30.80)
>DroPer_CAF1 19943 102 + 1
UAAUAGUU--UCCAUUAAGGCUGCCCUGAAAUUAGCAAACGAUUCCAGCGAUUGAUAACGCCUAUGUUGUCAUUGGGA--------------GAACUGGGUGACCUUGUGGGGCAAGC
........--.........((((((((...............((((((....((((((((....))))))))))))))--------------..((.((....))..))))))).))) ( -27.00)
>consensus
UUAUAGUU__UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC__GCUGAUAAG__CGAGUAUUCCGUUGGGAACCGUAA_AGUUGGAAACUGGGUGACCUUCUGGC______
...........((((..(((((((((.((((((.......)))))).....................(((((.................)))))...))))))))).))))....... (-19.12 = -19.10 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:37 2006