| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,651,591 – 20,651,697 |
| Length | 106 |
| Max. P | 0.829595 |
| Location | 20,651,591 – 20,651,697 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 89.95 |
| Mean single sequence MFE | -35.95 |
| Consensus MFE | -25.15 |
| Energy contribution | -26.15 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20651591 106 - 22407834 CACAGCCGGAAACCACAGCGACGAGGAGCAGCAUCAGCAGCAGCAGCAACCUCAUGAGGAUCAGCCCAUGCAAGUUUCGGAGGCUGACGAGGAAGUUCCUCAAAAA ..(((((.(((((....((........)).((((..((.((....))..(((....)))....))..))))..)))))...)))))..((((.....))))..... ( -33.00) >DroSec_CAF1 4401 103 - 1 CACAGCCGGAAACCAUAGCGAUGAGGAGCAGCAUCAGCAG---CAGCAACCUCAUGAGGACCAACACAUGCAAGUGCUGGAGGCUGACGAGGAAGUUCCUCAAAAA ..((((((....).......((((((.((.((.......)---).))..)))))).....(((.(((......))).))).)))))..((((.....))))..... ( -33.30) >DroSim_CAF1 4405 103 - 1 CACAGCCGGAAACCAUAGCGAUGAGGAGCAGCAUCAGCAG---CAGCAACCUCAUGAAGACCAGCACAUGCAAGUGCUGGAGGCUGACGAGGAAGUUCCUCAAAAA ..((((((....).......((((((.((.((.......)---).))..)))))).....(((((((......))))))).)))))..((((.....))))..... ( -39.90) >DroYak_CAF1 4461 103 - 1 CACAGCGGGAAACCACAGCGAUGAGGAGCAACAUCACCAG---CAGCCACCUCUUCAGGACCAGCCCAUACAAGUGUUGGAGGCUGUCGAGGAAGUUCCUCAAAAA ....(.((....)).).....((((((((....((..(.(---(((((.(((....))).(((((.(......).))))).)))))).)..)).)))))))).... ( -37.60) >consensus CACAGCCGGAAACCACAGCGAUGAGGAGCAGCAUCAGCAG___CAGCAACCUCAUGAGGACCAGCACAUGCAAGUGCUGGAGGCUGACGAGGAAGUUCCUCAAAAA ....((.(....)....))...(((((((.......((.......))..((((....((.(((((((......)))))))...))...))))..)))))))..... (-25.15 = -26.15 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:55 2006