| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,643,201 – 20,643,321 |
| Length | 120 |
| Max. P | 0.595134 |
| Location | 20,643,201 – 20,643,321 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -46.70 |
| Consensus MFE | -27.84 |
| Energy contribution | -27.98 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20643201 120 + 22407834 CGUCGCACUUUCUCAAACGCCCGCUGAAGGACGCGAGCGCGCGAUGGACCCACGCCGCGGAGCAGCACCAGCAGGCAGCUGUGGUGCAGGGCGCUCUGCUCGUAGUCUGGGCGUGACAAC .(((((...........(((((..........((..(((.(((.((....))))))))...)).((((((.(((....))))))))).)))))....(((((.....))))))))))... ( -50.90) >DroVir_CAF1 24070 120 + 1 CGUCGCACCUUCUCAAAGGCCCGCUGCAAAAUGCGGGCGCGUGAAGGCCCCACACCGCGCAGCAGCACCAGCAAGCAGCUAUGGUGGAGAGCAUUCUGCUCGUAAUCAAGACGUGACAUA .(((((.(((((.....(((((((........)))))).)..))))).....((((((......))...(((.....)))..))))..((((.....))))...........)))))... ( -43.50) >DroGri_CAF1 24748 120 + 1 CGUCGCACCUUCUCGAAGGCCCGCUGUAAAAUGCGGGCUCGUGAAGGGCCUACGCCGCGUAGCAGCACCAGCAGGCAGCUAUGAUGCAGGGCAUUCUGCUCAUAGUCCAGCCGCGAUAUA .(((((.(((((.(((..((((((........))))))))).)))))(((((((...)))))..)).......(((.(((((((.(((((....))))))))))))...))))))))... ( -54.70) >DroWil_CAF1 56192 120 + 1 CGACGCACUUUCUCAAAUGCCCUUUGCAGGACUCGGGCCCGGGAUGGCCCUACACCUCGGAGGAGUACCAAUAGGCAACUAUGAUGCAAGGCAUUCUGUUCAUAGUCGGGUCGUGACAUA ((((.((((....((((((((..((((((((((((((((......)))))....(....)..)))).)).((((....))))..))))))))))).)).....))).).))))....... ( -41.90) >DroMoj_CAF1 13390 120 + 1 CGUCGCACCUUCUCAAAAGCCCGUUGCAAAAUGCGGGCACGUGAAGGUCCCACGCCGCGCAACAGCACCAAGAGACAGCUAUGAUGCAGAGCAGUCUGCUCAUAAUCAAGACGUGACAUA .(((((....((((....((((((........)))))).((((.......))))..((......)).....))))....(((((.(((((....))))))))))........)))))... ( -39.50) >DroAna_CAF1 160634 120 + 1 CGUCGCACUUUCUCGAACGCCCUCUGGAGGAUGCGGGCCCGUGAGGGUCCCACUCCGCGGAGCAAUACCAGCAGACAGCCAUGAUGAAGGGCGCUCUGCUCGUAGUCCGGCCGGGACAUG ..........(((((...((((((((..(((((.((((((....)))))))).))).)))))...(((.((((((..(((.........)))..)))))).)))....)))))))).... ( -49.70) >consensus CGUCGCACCUUCUCAAACGCCCGCUGCAAAAUGCGGGCCCGUGAAGGCCCCACGCCGCGGAGCAGCACCAGCAGGCAGCUAUGAUGCAGGGCAUUCUGCUCAUAGUCAAGACGUGACAUA .(((((............((((((........)))))).((((..(......)..))))..................(((((((.(((((....))))))))))))......)))))... (-27.84 = -27.98 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:51 2006