Locus 7434

Sequence ID 2L_DroMel_CAF1
Location 20,628,514 – 20,628,606
Length 92
Max. P 0.731646
window11949 window11950

overview

Window 9

Location 20,628,514 – 20,628,606
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 84.60
Mean single sequence MFE -20.70
Consensus MFE -14.98
Energy contribution -15.73
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.72
SVM decision value 0.43
SVM RNA-class probability 0.731646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20628514 92 + 22407834
GCAUUUCGAACCGCCAAUAUGAAGUUUAUGGCAAUAUGCCUAUUGGCAAAUAUUGGCUACAGUAAGUACAUAGUACAUUUGUACAGAUAUCC
............((((((((...(((...(((.....)))....)))..))))))))........(((((.........)))))........ ( -21.10)
>DroSec_CAF1 186812 92 + 1
GCAUUUCGAACUGCCAAUAUGAAGUUUAUGGCAAUAUGCCUGUUGGCAAAUAUUGGCUGCAGUAAGUACAUAGUACAUAUGUACAGAUAUCC
(((.........((((((((...(((...(((.....)))....)))..))))))))))).....(((((((.....)))))))........ ( -24.70)
>DroSim_CAF1 179216 92 + 1
GCAUUUCGAACUGCCAAUAUGAAGUUUAUGGCAAUAUGCCUGUUGGCAAAUAUUGGCUGCAGUAAGUUCAUUGUACAUAUGUACAGAUAUCC
.......(((((((((((((...(((...(((.....)))....)))..)))))))).......))))).((((((....))))))...... ( -24.91)
>DroYak_CAF1 131832 77 + 1
GCAUUUAGAAUCACCAAUAUGCAGUUUAUGGCAAUAUGCCUAAUGUCAAAUAUUGGCUACAGUAAGUACAU---------------AUAUUC
(.(((((......(((((((.........(((.....))).........)))))))......))))).)..---------------...... ( -12.07)
>consensus
GCAUUUCGAACCGCCAAUAUGAAGUUUAUGGCAAUAUGCCUAUUGGCAAAUAUUGGCUACAGUAAGUACAUAGUACAUAUGUACAGAUAUCC
............((((((((...(((...(((.....)))....)))..))))))))...............((((....))))........ (-14.98 = -15.73 +   0.75)

alignment

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secondary structure

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dotplot

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Window 0

Location 20,628,514 – 20,628,606
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 84.60
Mean single sequence MFE -19.15
Consensus MFE -16.61
Energy contribution -16.30
Covariance contribution -0.31
Combinations/Pair 1.16
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.33
SVM RNA-class probability 0.690942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20628514 92 - 22407834
GGAUAUCUGUACAAAUGUACUAUGUACUUACUGUAGCCAAUAUUUGCCAAUAGGCAUAUUGCCAUAAACUUCAUAUUGGCGGUUCGAAAUGC
((((.....((((...((((...))))....))))((((((((.........(((.....))).........)))))))).))))....... ( -19.47)
>DroSec_CAF1 186812 92 - 1
GGAUAUCUGUACAUAUGUACUAUGUACUUACUGCAGCCAAUAUUUGCCAACAGGCAUAUUGCCAUAAACUUCAUAUUGGCAGUUCGAAAUGC
((((....(((((((.....)))))))........((((((((.........(((.....))).........)))))))).))))....... ( -22.07)
>DroSim_CAF1 179216 92 - 1
GGAUAUCUGUACAUAUGUACAAUGAACUUACUGCAGCCAAUAUUUGCCAACAGGCAUAUUGCCAUAAACUUCAUAUUGGCAGUUCGAAAUGC
.......(((((....))))).((((((.......((((((((.........(((.....))).........))))))))))))))...... ( -21.18)
>DroYak_CAF1 131832 77 - 1
GAAUAU---------------AUGUACUUACUGUAGCCAAUAUUUGACAUUAGGCAUAUUGCCAUAAACUGCAUAUUGGUGAUUCUAAAUGC
((((..---------------...(((.....)))((((((((.........(((.....))).........)))))))).))))....... ( -13.87)
>consensus
GGAUAUCUGUACAUAUGUACUAUGUACUUACUGCAGCCAAUAUUUGCCAACAGGCAUAUUGCCAUAAACUUCAUAUUGGCAGUUCGAAAUGC
((((....((((....))))...............((((((((.........(((.....))).........)))))))).))))....... (-16.61 = -16.30 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:45 2006