Locus 7413

Sequence ID	2L_DroMel_CAF1
Location	20,596,751 – 20,596,843
Length	92
Max. P	0.829029

overview

Window 3

Location	20,596,751 – 20,596,843
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	82.78
Mean single sequence MFE	-19.40
Consensus MFE	-13.36
Energy contribution	-13.20
Covariance contribution	-0.16
Combinations/Pair	1.07
Mean z-score	-2.04
Structure conservation index	0.69
SVM decision value	0.71
SVM RNA-class probability	0.829029
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20596751 92 - 22407834
UACAUAUGAACAUAUGUAUAUACAUAUGUGGGUGGUCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG
..(((....((((((((....))))))))..)))(((((((....))))))).(((....((((((((........))))))))..)))... ( -27.30)
>DroSec_CAF1 116213 74 - 1
U------------------AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG
.------------------.......((((..((((...((((.....)))).))))..)((((((((........))))))))...))).. ( -16.40)
>DroSim_CAF1 112025 74 - 1
U------------------AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG
.------------------.......((((..((((...((((.....)))).))))..)((((((((........))))))))...))).. ( -16.40)
>DroEre_CAF1 101417 71 - 1
UACAUAC--------------ACGUAU----GUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUU--CUAACUAAAUUGUCCAGGCAG-
((((((.--------------...)))----)))(((..((((.....))))........((((((((--......))))))))..)))..- ( -17.20)
>DroYak_CAF1 105594 80 - 1
UACAUAC------------UUACAUAUGUGGGUGGCCAAGUCAACACUUGACAGUCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG
....(((------------((((....)))))))(((..((((.....))))........((((((((........))))))))..)))... ( -19.70)
>consensus
UACAUA_____________AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG
..................................(((..((((.....))))........((((((((........))))))))..)))... (-13.36 = -13.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:11 2006