Locus 741

Sequence ID 2L_DroMel_CAF1
Location 2,128,800 – 2,128,920
Length 120
Max. P 0.706255
window1222

overview

Window 2

Location 2,128,800 – 2,128,920
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.42
Mean single sequence MFE -40.26
Consensus MFE -30.08
Energy contribution -31.44
Covariance contribution 1.36
Combinations/Pair 1.09
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 0.36
SVM RNA-class probability 0.706255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2128800 120 - 22407834
GGAACAACCAAGUAUGAUCUGGUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCAUGAACAGUUCAACAGA
.(.((.((((.(......))))).)).)((((((....((((((.((((((((((((((((.....)))).)))))...)))))))((((....)))).))))))...))))))...... ( -43.60)
>DroSec_CAF1 129054 120 - 1
GAAACAAUCGAAGAUGAUCUGUUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCACGAACAGUUCAACAGA
............(.(((.(((((.(((.((((((...(.(.((.(((((((((((((((((.....)))).)))))...)))))))))).).).))).))).))).))))).))).)... ( -43.80)
>DroSim_CAF1 128186 120 - 1
GAAACAAUCGCAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCACGAACAGUUCAACAGA
......(((((((.....)))).)))..((((((.....(((((.((((((((((((((((.....)))).)))))...)))))))((((....)))).)))))....))))))...... ( -43.60)
>DroEre_CAF1 131734 120 - 1
GACACCGCCGAAAAUGAUCUGGUGGUGCGAGCUGGCGAAUGGGAUAUUUCGACUACGAGUGACCAGCAGCAUGUGGAUCUCGAGGUCCUGAAAAUAGUCUACCAUGAGCAGUUCAACAGA
(.(((((((((......)).))))))))((((((.(..(((((((.((((((((.((((...(((........)))..)))).))))..))))...)))..))))..)))))))...... ( -39.00)
>DroYak_CAF1 134233 120 - 1
GAUACUACUGAAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACUUCGACUACGAAUGACCGGAAGCAUGUGGAUCUCGAGGUUCUGAAAAUAAUCUCCCAUGAACAGUUCAACAGA
.......(((..........((....))((((((....((((((.(((((((((((..(((..(....))))))))...)))))))...((......))))))))...))))))..))). ( -31.30)
>consensus
GAAACAACCGAAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCAUGAACAGUUCAACAGA
........................((..((((((....(((((((((((((((((((((((.....)))).)))))...))))))))..((......))))))))...)))))).))... (-30.08 = -31.44 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:31 2006