Locus 740

Sequence ID 2L_DroMel_CAF1
Location 2,126,718 – 2,126,833
Length 115
Max. P 0.952151
window1221

overview

Window 1

Location 2,126,718 – 2,126,833
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 89.91
Mean single sequence MFE -35.46
Consensus MFE -28.34
Energy contribution -29.38
Covariance contribution 1.04
Combinations/Pair 1.12
Mean z-score -2.11
Structure conservation index 0.80
SVM decision value 1.42
SVM RNA-class probability 0.952151
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2126718 115 + 22407834
CAAAUGCCACGCAUACAAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
((((..(((((((((((......(((((((..((((.(((..((((.....))))..)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -37.90)
>DroSec_CAF1 126964 115 + 1
CAAAUGCCACGCAUACGAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
((((..(((((((((((......(((((((..((((.(((..((((.....))))..)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -37.20)
>DroSim_CAF1 126056 104 + 1
CAAAUGCCACGCAUACGAAUGCCGGCUUACAACUGUUGCAUGUGUG-----------UGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
((((..(((((((((((......(((((((..((((.((((....)-----------)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -32.20)
>DroEre_CAF1 129710 106 + 1
---------CGCAUACAAAUGCCAGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGUGCAGGUGCGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
---------(((((((((((((.(((........)))))))..(((..((((((....)))).))..)))))))))))).................(((((......)))))... ( -31.10)
>DroYak_CAF1 132118 115 + 1
CAAAGGCCACGCAUACAGAUGCCGACUUACAACUGUUGCAUGUGUGUGCCGUGCGUGUGUGCAGGUGCGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
((((((((((((((((((((((.(((........)))))))..(((..((.((((....))))))..)))))))))))))).)..)))))).....(((((......)))))... ( -38.90)
>consensus
CAAAUGCCACGCAUACAAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU
.......((((((((((......(((((((..((((.(((..((((.....))))..))))))))))))))))))))))))...............(((((......)))))... (-28.34 = -29.38 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:30 2006