| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,126,382 – 2,126,483 |
| Length | 101 |
| Max. P | 0.610607 |
| Location | 2,126,382 – 2,126,483 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.87 |
| Mean single sequence MFE | -37.15 |
| Consensus MFE | -27.24 |
| Energy contribution | -27.60 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2126382 101 + 22407834 CUAA---------------UGCCAUC---GGCGGAGUGCUUAUGUGUGCGUGAGGUGCGGCAAGUGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGCCGCGCUUGCCCCU-AAAUU ....---------------.(((...---)))((.(..((((((....))))).)..)(((((((((.((.......((((((...)))))).......)).))))))))))).-..... ( -34.84) >DroSec_CAF1 126609 116 + 1 CACACACAAUCGCACACUCCGCCACC---GGCGGAGUGCUUAUGUGUGCGUGAGGUGCGGCAAGUGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGCCGCGCUUGCCCCC-AAAUG (((.((((......(((((((((...---)))))))))......)))).))).((.(.(((((((((.((.......((((((...)))))).......)).))))))))))))-..... ( -52.24) >DroEre_CAF1 129377 103 + 1 CUAA---------------UGCCAUCAGGGGCGGAGUGCUUAUGUGUGCGUGAGGUGCGGCAAGUGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGCCGCGCUUGCCCC--AAAUG ....---------------........((((((.((((((((((....))))).(((((((....))))))).....(((((((....))).......)))))))))))))))--..... ( -38.21) >DroYak_CAF1 131744 102 + 1 CUAA---------------UGCCAUC---GGCAGAGUGCUUGUGUGUGCGUGAGGUGCGGCAAGUGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGCCGCGCUUGCCCCCAAAAUG ...(---------------((((((.---(((.....)))...))).))))..((.(.(((((((((.((.......((((((...)))))).......)).))))))))))))...... ( -34.14) >DroAna_CAF1 132625 99 + 1 UUUA---------------UGUUAUA---UGU-GUUUGCUUAUGUGGGCGUGAGGUGCGGGAA-UGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGUCAUUCUUGCCUCG-AAAUA ....---------------.....((---((.-(((.(((((.(..(.((....((((((...-..))))))....)).)..))))))))).))))..((.((....))))...-..... ( -26.30) >consensus CUAA_______________UGCCAUC___GGCGGAGUGCUUAUGUGUGCGUGAGGUGCGGCAAGUGCUGCACAAAUCGGUUGCUAAGUAGCUCAUAAUGGCCGCGCUUGCCCCC_AAAUG ...................((((......))))..(((((((((....))))).))))(((((((((.((.......((((((...)))))).......)).)))))))))......... (-27.24 = -27.60 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:28 2006