Locus 738

Sequence ID 2L_DroMel_CAF1
Location 2,126,041 – 2,126,154
Length 113
Max. P 0.731916
window1219

overview

Window 9

Location 2,126,041 – 2,126,154
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.97
Mean single sequence MFE -29.87
Consensus MFE -23.60
Energy contribution -24.20
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.43
SVM RNA-class probability 0.731916
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2126041 113 + 22407834
GUCGCAACAAUAGUGCCAAGUUGCU-----CGGAUCCAAGUUGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAGCGUUCGAACAAAGCCACAAAAGCAAUGGCAA
.............(((((..(((((-----.(((.((.....)).)))......(((.((--((((((.((.....))..)))))))))))..................)))))))))). ( -29.70)
>DroSec_CAF1 126271 113 + 1
GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGUUGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA
.............(((((..(((.(-----(((((((.....))))))......((.(((--((((((.((.....))..)))))))))))...)).))).((.......))..))))). ( -30.40)
>DroEre_CAF1 129062 113 + 1
GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGUCGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA
.............(((((..(((.(-----(((((((.....))))))......((.(((--((((((.((.....))..)))))))))))...)).))).((.......))..))))). ( -30.10)
>DroYak_CAF1 131398 113 + 1
GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGGCGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA
.............(((((..(((((-----....)))))(((.((((.......((.(((--((((((.((.....))..)))))))))))...))))...)))..........))))). ( -30.20)
>DroAna_CAF1 132227 120 + 1
GUUGCAACAAUGGUGGCAACUUGAAAGCAAUGGUACCAACUUGGUUCCAUAAAUCGCAUACCCAAAUAGCCACAUGGGAGUGUUUGAAUCGUUCGAACAAAGCCACAAAAUCAAUGGCAA
.((((.......(((((.........((.((((.(((.....))).)))).....))...((((..........))))..(((((((.....)))))))..)))))..........)))) ( -28.93)
>consensus
GUCGCAACAAUAGUGCCAAGUUGGU_____CGGAACCAAGUUGGUUCCAUAAAUCGCAUA__CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA
...((..((((........))))........((((((.....)))))).......))...........((((..((((..((((((.......))))))...)).)).......)))).. (-23.60 = -24.20 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:27 2006