Locus 7363

Sequence ID 2L_DroMel_CAF1
Location 20,512,389 – 20,512,496
Length 107
Max. P 0.969342
window11822

overview

Window 2

Location 20,512,389 – 20,512,496
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.89
Mean single sequence MFE -25.05
Consensus MFE -9.63
Energy contribution -9.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.56
Structure conservation index 0.38
SVM decision value 1.64
SVM RNA-class probability 0.969342
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20512389 107 + 22407834
ACCGUC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACAACAAGGAGAC
.(((((----------((....))--).))))......((((..(((((((.(((.....))).)))))......(((.....)))....)).((-....))............)))).. ( -27.50)
>DroPse_CAF1 68452 113 + 1
NNNNNNNNNNNNNNNNNAUGCCUUAUGUGGAACACACACUUCACGCUGGGCAUGCAAAAUGCAAGUGGAAUACAAUGCAAAAUGCAAAACGCC----AACCCAAAAAAAA---AGGGGGA
..................(((((..((((((........))))))..)))))((((...((((..((.....)).))))...)))).......----..(((........---.)))... ( -24.70)
>DroEre_CAF1 27977 107 + 1
ACCGCC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACAACAAGGAGAC
...(((----------(.......--...)))).....((((..(((((((.(((.....))).)))))......(((.....)))....)).((-....))............)))).. ( -26.40)
>DroYak_CAF1 29079 107 + 1
ACCGUC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACGACAAGGGCGC
..((((----------..(((.((--(...(((.............(((((.(((.....))).)))))......(((.....)))....)))((-....))......))).))))))). ( -28.30)
>DroAna_CAF1 21836 106 + 1
CCUGUC----------GACUUCUC----ACGUUGCACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCAAACAAACCAACCCAGAACAAGCUGGC
..((((----------(((.....----..)))).)))......(((((((.(((.....))).)))))......(((.....)))....)).............((((......)))). ( -19.30)
>DroPer_CAF1 74469 107 + 1
UCCACCCCCCUCCCCUCAUGCCUCAUGUGGAACACACACUUCACGCUGGGCAUGCAAAAUGCAAGUGGAAUACAAUGCAAAAUGCAAAACGCC----AACCCAAACCAAA---------A
(((((...........(((((((..((((((........))))))..)))))))..........)))))......(((.....))).......----.............---------. ( -24.10)
>consensus
ACCGUC__________GACUUCUC__GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG_GAAACCAACACACAACAAGGAGGC
................................................(((.(((.....)))............(((.....)))....)))........................... ( -9.63 =  -9.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:49 2006