Locus 7352

Sequence ID 2L_DroMel_CAF1
Location 20,494,101 – 20,494,220
Length 119
Max. P 0.908905
window11803

overview

Window 3

Location 20,494,101 – 20,494,220
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 75.06
Mean single sequence MFE -34.78
Consensus MFE -19.22
Energy contribution -20.50
Covariance contribution 1.28
Combinations/Pair 1.17
Mean z-score -1.98
Structure conservation index 0.55
SVM decision value 1.06
SVM RNA-class probability 0.908905
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20494101 119 + 22407834
GUAGAUUUUCCCGCGGCUAAAGUCAAUAGAAAACAAUGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUGAAGGAAAAUAGCUCCUCGCUAUUCUAUCACAUCU
(((((..(((((..(((....)))....((((((.....))))))....)))))...((((((.((....(((..((((((......))))))..))))).)))))))))))....... ( -35.50)
>DroSec_CAF1 11177 119 + 1
GUGGAUUUCCCCACGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUAAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCGUCU
((((......))))(((...........((((((.....))))))....((((...(((((((.((....(((..((((((......))))))..))))).)))))))...))))))). ( -39.30)
>DroSim_CAF1 16244 119 + 1
GUGGAUUUCCCCACGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUAAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCGUCU
((((......))))(((...........((((((.....))))))....((((...(((((((.((....(((..((((((......))))))..))))).)))))))...))))))). ( -39.30)
>DroEre_CAF1 10349 95 + 1
GUG--UUU---------UGCAGC-------------AGCUGGUUCAUUUGGGAAGCGGUGGCGCGGUCAAAGCGUUUUUCCGGUGAAGGAAAAUAGCUGCUCGCUUCGCUAUUCCAUCC
(((--...---------.(((((-------------(((((.(((((..(..(((((.((((...))))...)))))..)..)))))......)))))))).))..))).......... ( -30.90)
>DroYak_CAF1 10343 98 + 1
GC---------------UGGAGUCGACACAAGAGAAUGCGUAUUCAUUUGGGAGCCGGAAGCGCGGUCAAAGCAUUUUUCCGGUGCAGGAAAAUAGCUGCCCG-----CUAUUCCAUU-
..---------------((((((.(......(((((((((....).(((((..(((....).))..))))))))))))).(((.((((........)))))))-----).))))))..- ( -28.90)
>consensus
GUGGAUUU_CCC_CGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUGAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCAUCU
................................................(((((...(((((((.((....(((..((((((......))))))..))))).)))))))...)))))... (-19.22 = -20.50 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:32 2006