Locus 7346

Sequence ID	2L_DroMel_CAF1
Location	20,487,333 – 20,487,447
Length	114
Max. P	0.549343

overview

Window 8

Location	20,487,333 – 20,487,447
Length	114
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	70.67
Mean single sequence MFE	-24.93
Consensus MFE	-12.19
Energy contribution	-13.62
Covariance contribution	1.44
Combinations/Pair	1.17
Mean z-score	-1.78
Structure conservation index	0.49
SVM decision value	0.03
SVM RNA-class probability	0.549343
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20487333 114 - 22407834
GUCAGGCGGACUGGGAAAACCACUAAUAUCUUUUGAAAUAGUGUUAUUUAAAAUACUGCGAAAGCAGGUGGUUU-AGGCAACUCUAUUAAAGUUGAUGUUAUAAAAAUGUCAUGC
.....(((((((((.....))).(((((((..((..(((((.(((.((((((...((((....))))....)))-))).))).)))))..))..))))))).......))).))) ( -31.00)
>DroSec_CAF1 4387 110 - 1
GUCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUUCGGAAGCAGGUGGUUU-A----ACUCUAUUAAGGUGGACAUUUUAAAAAUGCCUUGC
(((.....)))(((.....)))......((((((..(((((.((((.......((((((....).)))))...)-)----)).))))).)))))).................... ( -22.10)
>DroSim_CAF1 9706 109 - 1
-UCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU-A----ACUCCAUUAAAGUGGACGUUAUAAAAAGGACAUGC
-...((((..((....((((((((...............((((((......))))))((....)).))))))))-(----(((((((....))))).)))......))..)))). ( -32.20)
>DroYak_CAF1 3657 90 - 1
-------------------------AAACCAUUUACAAUAUGGUAAUAUAAAAUAAAGCGGAAUUAAGUGGUUUUAGGUGACUCUAUUAAAGUGGACAUUAUAAGUAGGCAACGC
-------------------------...((((((..((((.(((....((((((...((........)).))))))....))).)))).))))))............(....).. ( -14.40)
>consensus
_UCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU_A____ACUCUAUUAAAGUGGACAUUAUAAAAAGGCCAUGC
...........(((.....)))......((((((..(((((.((......((((.((((....))))...))))......)).))))).)))))).................... (-12.19 = -13.62 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:19 2006