| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,480,422 – 20,480,542 |
| Length | 120 |
| Max. P | 0.720511 |
| Location | 20,480,422 – 20,480,542 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.08 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -25.72 |
| Energy contribution | -25.56 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20480422 120 - 22407834 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGUGGGCUAAAGUUUUCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUGUGGAUUAUUGGA ((....((((.(.((((((((((...................(((((((((((.......))))).))))))((...(((......)))..)).)))).)))))).).)))).....)). ( -28.20) >DroSec_CAF1 33335 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCUAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAGUUGCUUGUUUCGGAUUAUUGGU ((....((((((.((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).)))))).)))))).....)). ( -30.90) >DroSim_CAF1 37158 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCCAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUUCGGAUUAUUGGA ((....((((((.((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).)))))).)))))).....)). ( -33.70) >DroEre_CAF1 35398 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUGAACUGAGGGGUAAAGUUUGCUUGGCUCUACAGGCAUGCAUGAAUAAAUGAGGCAGAAAUUGCUUGUUGCGGAUUAUUGGA ((....((((.(.((((((((((...................(((.(((((.(((....))).))))).)))((...(((......)))..)).)))).)))))).).)))).....)). ( -31.90) >DroYak_CAF1 32914 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUGAACUGAGAGGUAAAGUUUCUUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGGUUGUUAUGGAUUAUUGGA (((......)))((((.....((.((..((..(((((((...(((((((.(((((...))))).)))).)))((...(((......)))..))..)))))))..)).)).))...)))). ( -23.00) >consensus CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCUAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUGCGGAUUAUUGGA ((....((((...((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).))))))...)))).....)). (-25.72 = -25.56 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006