Locus 732

Sequence ID 2L_DroMel_CAF1
Location 2,121,153 – 2,121,270
Length 117
Max. P 0.639473
window1202

overview

Window 2

Location 2,121,153 – 2,121,270
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -28.48
Consensus MFE -23.46
Energy contribution -24.06
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.639473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2121153 117 - 22407834
AGGCAUCUCCGCAUCUCCGCGAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA
.((((.(..(((((....(((.....))---)..(((..(((((....)))))..)))...(((((((......))))).)).)))).)..).))))....................... ( -29.80)
>DroSec_CAF1 121452 117 - 1
AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA
.((((.(..(((((.(((.....(((.(---(((........))))....)))...)))..(((((((......))))).)).)))).)..).))))....................... ( -28.50)
>DroSim_CAF1 121242 117 - 1
AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA
.((((.(..(((((.(((.....(((.(---(((........))))....)))...)))..(((((((......))))).)).)))).)..).))))....................... ( -28.50)
>DroEre_CAF1 124138 113 - 1
AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUUGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUG---CUGCCCCAAACAAAACUAAGUAAAACA-
.((((.(...((((.(((((.......(---((....)))...(((..(((((.....)))))..))).......)))))...)))).)---.))))......................- ( -28.80)
>DroYak_CAF1 126448 117 - 1
AGGCAUCUCCGCAUCGUCGCCCUCCCCUUGUCAUCCUUAUGCCUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUG---CUGCCCCAAACAAAACUAAGUAAAACAA
.((((.(...((((....(((..(((.(((.((..(....)..)))))..)))...)))..(((((((......))))).)).)))).)---.))))....................... ( -26.80)
>consensus
AGGCAUCUCCGCAUCGCCGCCAUCCCCG___CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA
.((((...(.((((....(((...((((...(((........)))....))))...)))..(((((((......))))).)).)))).)....))))....................... (-23.46 = -24.06 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:11 2006