Locus 7315

Sequence ID 2L_DroMel_CAF1
Location 20,465,609 – 20,465,729
Length 120
Max. P 0.791557
window11719

overview

Window 9

Location 20,465,609 – 20,465,729
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -23.99
Consensus MFE -19.44
Energy contribution -19.64
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.81
SVM decision value 0.59
SVM RNA-class probability 0.791557
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20465609 120 - 22407834
UUAAGUUGCCCCAAAAGCUUGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA
....(((((....((((.(((..(((........(((((...............))))).........)))..))).))))))))).............(((((((.....))))))).. ( -23.19)
>DroSec_CAF1 18577 120 - 1
UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA
....((((((((....((.(....).)).((......)).))).....................((.....))........))))).............(((((((.....))))))).. ( -24.50)
>DroSim_CAF1 20497 120 - 1
UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA
....((((((((....((.(....).)).((......)).))).....................((.....))........))))).............(((((((.....))))))).. ( -24.50)
>DroEre_CAF1 21215 119 - 1
UUAAGUUGCCCCA-ACGCUCACAAGCGCCCAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCAAGCUGGAGCAA
....((((...))-))((((...(((((((..........))).).................(((..((((.......(((((....)))))......))))..)))...))).)))).. ( -24.02)
>DroYak_CAF1 18238 120 - 1
UUAAGUUGCCCCAAACGCUCACAAGCGCACAGUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCAAGAUGGAGCAA
.....(((((((....((((((.........))))))...)))...................((((..((((.............))))..........((.....))..))))..)))) ( -23.72)
>consensus
UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA
....((..(((((...(((((...........))))))).)))..)).....................((((.............))))..........(((((((.....))))))).. (-19.44 = -19.64 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:15 2006