Locus 7308

Sequence ID 2L_DroMel_CAF1
Location 20,461,400 – 20,461,520
Length 120
Max. P 0.523035
window11702

overview

Window 2

Location 20,461,400 – 20,461,520
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -33.00
Consensus MFE -30.26
Energy contribution -30.50
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.523035
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20461400 120 - 22407834
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGCAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA
((((((((((((....)))))))....))))).(.(((((.((((....)))).....(((((....((((.(((.......))).)))).....(......).)))))..))))).).. ( -34.40)
>DroSec_CAF1 14391 120 - 1
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA
.(((((((((((....))))))))....(((((......)))))......))).....(((((....((((.(((.......))).)))).....(......).)))))........... ( -32.80)
>DroSim_CAF1 16237 120 - 1
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCUGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA
.(((((((((((....))))))))....(((((......)))))......))).....(((((....((((.(((.......))).)))).....(......).)))))........... ( -30.60)
>DroEre_CAF1 17050 120 - 1
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGGAAACCCAGCUCCUUAUUGCCCAA
.(((((((((((....))))))))....(((((......)))))......)))....(((.(.((((((.(((.......(((........))).((....))))).)))))).).))). ( -31.70)
>DroYak_CAF1 14478 120 - 1
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUACCUAAAUGGACCAUAAGGCGUUAAAAUGAUGCUAUCGCCCACACGAAAACCCAGGUCCUUAUGGCCCAA
.......(.((((((((.....(((...(((((......)))))......))).....(((((....((((((.....)))))).(((......))).......)))))))))))))).. ( -35.50)
>consensus
CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA
.(((((((((((....))))))))....(((((......)))))..............(((((....((((.(((.......))).)))).....(......).))))).....)))... (-30.26 = -30.50 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:59 2006