Locus 7306

Sequence ID 2L_DroMel_CAF1
Location 20,460,212 – 20,460,323
Length 111
Max. P 0.985748
window11700

overview

Window 0

Location 20,460,212 – 20,460,323
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.34
Mean single sequence MFE -35.88
Consensus MFE -18.38
Energy contribution -19.22
Covariance contribution 0.84
Combinations/Pair 1.15
Mean z-score -3.16
Structure conservation index 0.51
SVM decision value 2.02
SVM RNA-class probability 0.985748
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20460212 111 + 22407834
UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAGUAAGUACUCCAUUUGGACUAGAAUGGCUUUGGUUUAGUGUGUAUAUACUCGCACCGAGCAAUUAUAUCC
..---------(((((((..(((.(((((((.....((((((.....)))))).......)))))))..)))..))))))).(((..(((((........)))))..))).......... ( -35.20)
>DroSec_CAF1 13204 105 + 1
UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG----UACUCCAUUUGGACGAGAAUGGCUUUGGUUUAGU--GCAUAUACUCGCACAGAGCAAUUAUAUCC
..---------(((((((..((..(((((((...((((((((.....))))----)))).)))))))...))..))))))).((((.((--((........)))).)))).......... ( -38.00)
>DroSim_CAF1 15017 105 + 1
UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG----UGCUCCAUUUGGACGAGAAUGGCUUUGGCUUAGU--GUAUAUACUCGCACAGAGCAAUUAUAUCC
..---------(((((((..((..(((((((...((..((((.....))))----..)).)))))))...))..))))))).((((.((--((........)))).)))).......... ( -37.50)
>DroEre_CAF1 15562 108 + 1
UGAAAUAAGCGAAAGCCAGGCUGUCCAAGUGCCCAGUGCUCUGACCAGGAG----UACUCCAUUUGGAUGGAAAUGGCUGCGGUUCAGU--GUGUAUG------CCGAACAAUUAUAUCG
.((.((((((...(((((..(((((((((((...((((((((.....))))----)))).)))))))))))...))))))).((((.((--......)------).))))..)))).)). ( -40.20)
>DroYak_CAF1 13494 99 + 1
UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUUUGACCAGGAG----UACUCCAUUUGGAUGAAAAUGGGUUUGGUUUAGU--GUGUAUA------CCAAACAAAUGCAUCC
..---------.((((((((((..(((((((...((((((((.....))))----)))).)))))))((....)).))))))))))...--((((((.------........)))))).. ( -28.50)
>consensus
UG_________AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG____UACUCCAUUUGGACGAGAAUGGCUUUGGUUUAGU__GUAUAUACUCGCACCGAGCAAUUAUAUCC
..............((...((((((((((.((((....(((...(((((((......))))...)))..)))..))))))))).)))))..))........................... (-18.38 = -19.22 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:57 2006