Locus 7302

Sequence ID 2L_DroMel_CAF1
Location 20,458,979 – 20,459,086
Length 107
Max. P 0.509443
window11693

overview

Window 3

Location 20,458,979 – 20,459,086
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -16.56
Consensus MFE -11.02
Energy contribution -10.78
Covariance contribution -0.24
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.509443
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20458979 107 + 22407834
AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCUCUCGCUCGGCUCCUCUCUUUCUCUUUUUGUUU
(((((.((.....((-------------((.........))))..)).))))).........((((((((..((.((((...........)))).))..)))............))))). ( -17.70)
>DroSec_CAF1 12020 107 + 1
AGCGAUUUUCCCUUG-------------CCAUUUUCGCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUUCUGCUA
(((((.((.....((-------------((.........))))..)).)))))...(((...((.((((((.....)).........((......)).......)))).))....))).. ( -15.50)
>DroSim_CAF1 13842 107 + 1
AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUUCUGCUU
(((((.((.....((-------------((.........))))..)).)))))...(((...((.((((((.....)).........((......)).......)))).))....))).. ( -15.50)
>DroEre_CAF1 14486 84 + 1
AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCCUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGC-----------------------
.((((........((-------------((.........)))).......((((((((....).)))))))......................))))----------------------- ( -18.40)
>DroYak_CAF1 12302 110 + 1
AGCGAUUUUCCCUUGCGAUUUUCCCUUACCAUUUUCCCCGGCAUUAAUUCGCCUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGCCCCCUCUCUUUCU----------
.((((.......)))).......................(((........((((((((....).)))))))((.....))...............)))............---------- ( -15.70)
>consensus
AGCGAUUUUCCCUUG_____________CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUU_UG_U_
.......................................(((.((((...((((((((....).)))))))..)))).)))....................................... (-11.02 = -10.78 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:51 2006