| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,120,607 – 2,120,726 |
| Length | 119 |
| Max. P | 0.505499 |
| Location | 2,120,607 – 2,120,726 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.03 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -19.39 |
| Energy contribution | -18.87 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2120607 119 + 22407834 AUUAGGAUAAAUAUG-UGUGGAUUUACCUUAUUUUACUGCAUAUUUAACGAUCCUAAAGUGCAAAGUGACGCCUUAAACUACAAGCGGCUUGCAUAAGUUGUUUGUUAAAAUAUUUAUCU ..(((((((((((((-((((((..........))))).)))))))))....)))))(((.((........))))).....(((((((((((....))))))))))).............. ( -25.80) >DroSec_CAF1 120945 119 + 1 AUUAGGAUAAAUAUG-UGUGGACUUACCUUAUUUUUCUGCAUAUUUAACGCUCCUAAAGUGCAAAGUGACGCCUUAAACUACAAGCGGCUUGCAUAAGUUGUUUGUUAAAAUAUUUAUCU ....(((((((((((-(((((.....)).........(((((.((((.......))))))))).....))))........(((((((((((....)))))))))))....)))))))))) ( -24.80) >DroSim_CAF1 120731 119 + 1 AUUAGGAUAAAUAUG-UGUGGAUUUACCUUAUUUUUCUGCAUAUUUAACGCUCCUAAAGUGCAAAGUGACGCCUUAAACUACAAGCGGCUUGCAUAAGUUGUUUGUUAAAAUAUUUAUCU ....(((((((((((-((..((.............))..))).(((((.((((((.........)).)).)).)))))..(((((((((((....)))))))))))....)))))))))) ( -25.62) >DroEre_CAF1 123647 118 + 1 AUUAGGAUAA-UAUG-UAUGAAUUUACUCUAUUUUCCAGCAUUUCCAAUGAUCCCACAGUGGAAAAUGACGCCUUAAACUGCAAGCGGUUUGCAUAAAUUGUUUGCUAAAAUAUUUAUCU ....(((.((-((.(-((......)))..)))).))).(((((((((.((......)).))).))))).)..........(((((((((((....))))))))))).............. ( -23.10) >DroYak_CAF1 125932 120 + 1 AUUAGGAUAAAUAUAUUGUGAAUAUACCAUAUUUUACUGCAUAUUCAAAGAUGCGAAAGUGCAAAAUGACGCCUUCAACUGCAAGCGGUUUGCAUAAAUUGUUUGUUAAAAUAUUUAUCU ....((((((((((...(((((..........)))))(((((.(((........))).))))).................(((((((((((....)))))))))))....)))))))))) ( -23.70) >consensus AUUAGGAUAAAUAUG_UGUGGAUUUACCUUAUUUUACUGCAUAUUUAACGAUCCUAAAGUGCAAAGUGACGCCUUAAACUACAAGCGGCUUGCAUAAGUUGUUUGUUAAAAUAUUUAUCU ....((((((((((...............(((((...(((((................))))))))))............(((((((((((....)))))))))))....)))))))))) (-19.39 = -18.87 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:09 2006