Locus 73

Sequence ID 2L_DroMel_CAF1
Location 261,991 – 262,098
Length 107
Max. P 0.938720
window113

overview

Window 3

Location 261,991 – 262,098
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 64.94
Mean single sequence MFE -31.07
Consensus MFE -14.70
Energy contribution -15.08
Covariance contribution 0.38
Combinations/Pair 1.21
Mean z-score -2.02
Structure conservation index 0.47
SVM decision value 1.29
SVM RNA-class probability 0.938720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 261991 107 + 22407834
AAAGGGGUCCUUCGCGAGGCAGCAACAUUUGCAAGGCAAG-------------UUGCAUACAAUCCGCCGACAGGCGGACUCAACUAAAACUUGUUAAUUGGAAACAAAGCUAUGAGGAG
.......(((((.(((((...(((((..((((...)))))-------------))))......((((((....)))))))))................(((....))).))...))))). ( -33.60)
>DroSim_CAF1 55435 82 + 1
AAUGGGGACCUCCGCAAGGCAGCAACAUUUGCA-GGCAAG-------------UUUGCUGCGAUCCGCCGACAGGCGGACUCAACUUAAAUUCGUU------------------------
..((.((....)).))..(((((((.(((((..-..))))-------------))))))))((((((((....)))))).))..............------------------------ ( -31.90)
>DroEre_CAF1 59804 109 + 1
UAAGGAGGCCUCCGUGAGGCAACGACAUUUUCA-G-CAAGCCAACCCUCUUAAUUGG-AGCAAUACGCCGACAGGCGGACACAGCUCAAAUUCGUUAAUUGGGAACAACAAC--------
...((..(((((...)))))...((.....)).-.-....))..(((..(((((..(-(((....((((....))))......))))......)))))..))).........-------- ( -27.20)
>DroYak_CAF1 57497 119 + 1
UAAGGAUACCUCCGUGAGGCAUCAACAUUUGCA-GGUGAGCCAACCCAUUUAUUUGACUGCAUUCCGCCGACAGGCGGACACAACUCAAAUUCGUUAAUUGGAAACAACACUAUGAAGAG
...(((....))).(((((((((((........-(((......))).......)))).)))..((((((....)))))).....))))..(((((...(((....)))....)))))... ( -31.56)
>consensus
AAAGGAGACCUCCGCGAGGCAGCAACAUUUGCA_GGCAAG_____________UUGGCUGCAAUCCGCCGACAGGCGGACACAACUCAAAUUCGUUAAUUGGAAACAACACU________
...(((....)))..(((((((......))))...............................((((((....)))))).....)))...........(((....)))............ (-14.70 = -15.08 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:04 2006