Locus 7291

Sequence ID 2L_DroMel_CAF1
Location 20,431,672 – 20,431,774
Length 102
Max. P 0.963151
window11672

overview

Window 2

Location 20,431,672 – 20,431,774
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 64.38
Mean single sequence MFE -29.11
Consensus MFE -12.58
Energy contribution -13.06
Covariance contribution 0.48
Combinations/Pair 1.50
Mean z-score -2.22
Structure conservation index 0.43
SVM decision value 1.55
SVM RNA-class probability 0.963151
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20431672 102 - 22407834
AACAUUAGGCCUAAGUUGGGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACCUGGCUAGCUCAGGGGGGAAAUGCUGGGAUGCUGGAUUGCUGGGAGGGAAAG
..((((..((((.(((((....))))).)))).))))((((((((.....(..((...(((((.(......).)))))..))..).))))))))........ ( -35.50)
>DroPse_CAF1 10480 86 - 1
AACUUUCGACCCAAGCUGCGUUCACCUAAAAGAAAUCUCUGACAGAGAAUUUACAAAUCCUUGAAGCAUCUGCUGA----------------AGUUGGGGAA
...(..((((...((((((.((((........(((((((.....))).)))).........)))))))...)))..----------------.))))..).. ( -16.43)
>DroSec_CAF1 3055 99 - 1
AACUUUGAGCCUAAGUUGGGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACCUGGCUAGCUCAACGGGGAAAUGUUGGGAUGCCGGG---AUGGAGUUGAAAG
..((((.((((((.(((((((((.((....)).)).)))))))......((((((...(((((((......)))))))..))))))---.))).))).)))) ( -39.80)
>DroEre_CAF1 2927 86 - 1
AACUUUAGGCCUAAGUUGAGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAAUGGGGAAACGCUG----------------GAAGGGAAAG
..((((.(((....((((((((.(((.(((((...(((...)))....))))))))))))))))..(....)))).----------------))))...... ( -26.00)
>DroYak_CAF1 4100 86 - 1
AACUUUAGGCCUAGGUUGAGUUCAGCUUAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAACGGGAAACUUCUA----------------GAGGGGAAAG
..((((((((((((((((....)))))))))).((.((..(((.((....)).))).))))...((....)).)))----------------)))....... ( -27.80)
>consensus
AACUUUAGGCCUAAGUUGAGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAACGGGGAAAUGCUG________________GAAGGGAAAG
.........(((..((((((((.(((.(((((...(((...)))....)))))))))))))))))))................................... (-12.58 = -13.06 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:32 2006