| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,406,382 – 20,406,489 |
| Length | 107 |
| Max. P | 0.852852 |
| Location | 20,406,382 – 20,406,489 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.66 |
| Mean single sequence MFE | -24.09 |
| Consensus MFE | -14.84 |
| Energy contribution | -13.45 |
| Covariance contribution | -1.39 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.852852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20406382 107 + 22407834 UGUUCGUGUACAUUUGCCAUAA-AAUGUUCAACUUUUGUAAUAUUCUGGAGUCAAAGUGGCACGUCUUACGAUCUUCCUG-UAACUUGUGUCUCAAAUGCUCCAAUAUC .....((..((((((......)-)))))...)).............((((((....(.((((((..(((((.......))-)))..)))))).)....))))))..... ( -23.80) >DroPse_CAF1 1272 109 + 1 UGUUCGUGUACAAUAGGCCUUUAACUGUUAUACAAUAUUGUCUUCCUGGAGCCAAAGUGGCAUAUUUCUGAACCAACCUUCAGAUUUGUGUCUCAAAUACUCCGAUAAU ......((((.(((((........))))).))))..((((((.....((((.......((((((..((((((......))))))..)))))).......)))))))))) ( -27.34) >DroSim_CAF1 1713 107 + 1 UGUUCGUAUACAUUUGCCAUGU-AAUCUUGUACUCUUUCAAUAUUCUGGAGUCAAAGUGGCACAUUUUGCGAUCUUCCUG-UGACUUGUGUCUCAAAUGCUCCAAUAUC .....(((((...((((...))-))...))))).............((((((....(.((((((..(..((.......))-..)..)))))).)....))))))..... ( -22.40) >DroEre_CAF1 1120 108 + 1 UGUUUGUGUACAAUUGCCCUACAAAUCUUGUACUUUUUUGUAAUUCCGGAGUUAAAGUGGCACAUCUUGCGAUCUUCCUG-UAACUUGUGUCUCAAAUGCUCCAAUAUC .......(((((((((.....)))...))))))..............(((((....(.((((((..(((((.......))-)))..)))))).)....)))))...... ( -23.90) >DroYak_CAF1 965 108 + 1 UGUUCGUGUACAAUUGGCCUAUAAACCUUUUCCUUUUUUGCAAUUCGGGAGUCAAAGUGGCACAUCUCGCGAUCUUCCUG-UAAGUUGUGUCUCAAAUGCUCCAAUAUC ......((((.((..((..............))..)).)))).....(((((....(.((((((.((..((.......))-..)).)))))).)....)))))...... ( -20.44) >DroPer_CAF1 1109 109 + 1 UGUUCGUGUACAAUAGGCCUUUAACUGUUAUACAGUAUUGUUUUCCUGGAGCCAAAGUGGCAUAUUUCUGAACCAACCUUCAGAUUUGUGUCUCAAAUACUCCGAUAAU ......((((.(((((........))))).))))............(((((.......((((((..((((((......))))))..)))))).......)))))..... ( -26.64) >consensus UGUUCGUGUACAAUUGCCCUAUAAAUCUUAUACUUUUUUGUUAUUCUGGAGUCAAAGUGGCACAUCUCGCGAUCUUCCUG_UAACUUGUGUCUCAAAUGCUCCAAUAUC ...............................................(((((....(.((((((..(((((.......)).)))..)))))).)....)))))...... (-14.84 = -13.45 + -1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:10 2006