| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,259,329 – 20,259,433 |
| Length | 104 |
| Max. P | 0.999287 |
| Location | 20,259,329 – 20,259,433 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.69 |
| Mean single sequence MFE | -38.86 |
| Consensus MFE | -36.52 |
| Energy contribution | -36.36 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.94 |
| SVM decision value | 3.49 |
| SVM RNA-class probability | 0.999287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20259329 104 + 22407834 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroSec_CAF1 20868 104 + 1 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroSim_CAF1 19734 104 + 1 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroEre_CAF1 1133 111 + 1 GCUGGGGGAGC--GGGGAUGCCGAGGAAG-CGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUUCCACACAACAC------ (((.....)))--((..(((((((((((.-.(((.....)))...)))))))......((((..((((....((((....)))))))).))))....))))..)).........------ ( -38.30) >DroYak_CAF1 1159 120 + 1 ACAGGGGUGGCUUGGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACACGUGCAA ...(..(((...((((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....))))))))))))..)........ ( -42.00) >consensus AC________U__GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC______ .............(((((((((((((((...(((.....)))...)))))))......((((..((((...(((....)))...)))).))))....))))))))............... (-36.52 = -36.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:00 2006