| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,095,111 – 2,095,207 |
| Length | 96 |
| Max. P | 0.607608 |
| Location | 2,095,111 – 2,095,207 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.36 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.41 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2095111 96 - 22407834 AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- ......((((((((((((.............))))))))))))..(((.-------(((.......)))...(....)..........)))..(--((....--------)))-- ( -23.92) >DroSec_CAF1 112211 96 - 1 AAGUAAAUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUCAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- .......(((((((((((.............)))))))))))...(((.-------(((.......)))...(((......)))....)))..(--((....--------)))-- ( -24.62) >DroSim_CAF1 112053 96 - 1 AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- ......((((((((((((.............))))))))))))..(((.-------(((.......)))...(....)..........)))..(--((....--------)))-- ( -23.92) >DroEre_CAF1 114791 92 - 1 AAGUGAUUGCUUCAUUGCUGAUAUUUGCAGUGCAGUGAAGCAAAACAGA-------GGU----AAAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCGGCA--------GCU-- ..((..((((((((((((.............)))))))))))).))...-------...----...(((...(....)...........(....--).))).--------...-- ( -23.32) >DroYak_CAF1 116830 94 - 1 AAGUGAUUGCUUCAUUGCUUAUUUUUGCAGUGCAGUGAAGCGAACCGGA-------GGU----AAAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCUGA ......((((((((((((.............))))))))))))..(((.-------((.----....))...(....)..........)))..(--((....--------))).. ( -23.52) >DroAna_CAF1 116114 112 - 1 AAGUGAUUGCUUCAUUGCUUAUUUUUU-UGUUCAGUCAGGCAAGCUAAACAAAAAAAAAAGGAAAACUAAAAGUAAGCUGAGAUAAAGCUGAACAGACAGUAAAAAUAUUGCU-- .((..((((((((.((.(((.((((((-((((.(((.......))).)))))))))).))).))........((.((((.......))))..)).)).)))).....))..))-- ( -20.60) >consensus AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA_______GGUGGGUAAAGCCAAAGUGAACCGAGAUAAAACCGAAA__GCAGCA________GCU__ ..((..((((((((((((.............))))))))))))..(((........(((.......)))........)))................))................. (-16.30 = -16.41 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006