Locus 72

Sequence ID 2L_DroMel_CAF1
Location 255,014 – 255,106
Length 92
Max. P 0.967291
window112

overview

Window 2

Location 255,014 – 255,106
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 97.50
Mean single sequence MFE -24.98
Consensus MFE -22.72
Energy contribution -23.12
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.91
SVM decision value 1.61
SVM RNA-class probability 0.967291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 255014 92 + 22407834
UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAUAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC
.......(((((.(((..((((((...)))).(((.((((.(((..(...)..))))))).)))......))..))).)))))......... ( -27.30)
>DroSec_CAF1 46763 92 + 1
UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC
.......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10)
>DroSim_CAF1 48421 92 + 1
UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC
.......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10)
>DroEre_CAF1 48808 92 + 1
ACGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC
.......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10)
>DroYak_CAF1 50286 91 + 1
CCGUUUCGCUUUCGAUUUUG-GGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUGC
.......(((((.(....((-(((...)))))(((..(((.(((..(...)..))))))..)))............).)))))......... ( -22.30)
>consensus
UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC
.......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... (-22.72 = -23.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:03 2006