| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,091,394 – 2,091,485 |
| Length | 91 |
| Max. P | 0.999375 |
| Location | 2,091,394 – 2,091,485 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.12 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -26.16 |
| Energy contribution | -25.96 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.88 |
| SVM decision value | 3.55 |
| SVM RNA-class probability | 0.999375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2091394 91 + 22407834 -GAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGUGACUUUAAUUGGCAGGGGCCUUCAAUCA-AGUCAAC -....(((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....)))-))..... ( -29.80) >DroSec_CAF1 108416 93 + 1 AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCAAAGCCAAC ......((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....))))....... ( -29.10) >DroSim_CAF1 108263 93 + 1 AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCAAAGCCAAC ......((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....))))....... ( -29.10) >DroEre_CAF1 111074 92 + 1 AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGCCCUUCAAUCA-AGCCAAC .....(((((...((.(((...(((((((.((((((((((..((....))...))))))))))..))))))).)))))....)))-))..... ( -32.40) >DroYak_CAF1 112968 92 + 1 AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGUGACUUUAAUUGGCGGCUGCCUUCAAUCA-AGCCAAC .((.(((((...(((..(....)..))).)))))))(((((((((.(((....))).))))....)))))((((...........-))))... ( -28.00) >consensus AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCA_AGCCAAC ......(((((.....(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))))))))........... (-26.16 = -25.96 + -0.20)
| Location | 2,091,394 – 2,091,485 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 96.12 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -24.56 |
| Energy contribution | -24.36 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2091394 91 - 22407834 GUUGACU-UGAUUGAAGGCCCCUGCCAAUUAAAGUCACCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUC- (.(((((-((((((.((....))..))))).)))))).)((((...(((.((.((((((..(((....))).))))))..))))).))))..- ( -25.60) >DroSec_CAF1 108416 93 - 1 GUUGGCUUUGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU ...(((((((((((.((....))..)))))))))))((((...((....))..))))(((((((((((..........))))..))))))).. ( -29.10) >DroSim_CAF1 108263 93 - 1 GUUGGCUUUGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU ...(((((((((((.((....))..)))))))))))((((...((....))..))))(((((((((((..........))))..))))))).. ( -29.10) >DroEre_CAF1 111074 92 - 1 GUUGGCU-UGAUUGAAGGGCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU .....((-(((......(((..(((.(((....(((((((...((....))..)))))))...))).)))....)))......)))))..... ( -27.40) >DroYak_CAF1 112968 92 - 1 GUUGGCU-UGAUUGAAGGCAGCCGCCAAUUAAAGUCACCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU ..((((.-.(((((..(((((.((((((....(((..(((....)))..)))))))))...)))))..))))).))))............... ( -25.40) >consensus GUUGGCU_UGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU (.(((((.((((((.((....))..)))))).))))).)((((...(((.((.((((((..(((....))).))))))..))))).))))... (-24.56 = -24.36 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:47 2006