Locus 7187

Sequence ID 2L_DroMel_CAF1
Location 20,136,231 – 20,136,345
Length 114
Max. P 0.680950
window11470

overview

Window 0

Location 20,136,231 – 20,136,345
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.87
Mean single sequence MFE -31.62
Consensus MFE -13.46
Energy contribution -16.22
Covariance contribution 2.76
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.43
SVM decision value 0.31
SVM RNA-class probability 0.680950
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20136231 114 + 22407834
UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUUCCUGAUUGGC--GGAAUCGUAAAUU----AGUUCUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA
...(((.(((........((((..(((((.(((((((....)))))))...)))--)).))))......----..))).((((((.(((((((...)))))))))))))....))).... ( -31.19)
>DroSec_CAF1 47517 114 + 1
UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUCGUAAAUU----AGUUCUAGUGAGUGGAAAGGCAACUUUUCUCUCAUUCAAAGCCAUUA
...(((.(((........((((..(((((.(((((((....)))))))...)))--)).))))......----..))).((((((.((((((....)))))).))))))....))).... ( -39.09)
>DroAna_CAF1 8131 104 + 1
AAAGGCC-AAGCUCGAAUCGAUUGUUGCUCCAGGGCAGCU-------GAGAGUCUGUGAAUAGAAAACGUGGAGGUUAUA----AUGGAAAUUCUUCUUGUU--UUUUGCAAA--CAUUA
..((((.-...((((........((((((....)))))))-------))).))))((...(((((((((.(((((.....----........))))).))))--)))))...)--).... ( -22.32)
>DroEre_CAF1 23709 114 + 1
UUAAGCAGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUGGCAAAUU----AGUUUUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA
....((.......(((((.....)))))..(((((((....)))))))....))--..((((((.....----..(((.((((((.(((((((...))))))))))))).))))))))). ( -33.41)
>DroYak_CAF1 6159 114 + 1
UUAAGUGGAAAACGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUGGUAAAUU----AGUUUUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA
...(((((((((((((((.....)))))..(((((((....)))))))......--.............----.)))))((((((.(((((((...))))))))))))).....))))). ( -32.10)
>consensus
UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC__GGAAUCGUAAAUU____AGUUCUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA
.............(((((.....)))))..(((((((....)))))))...(((...((((....(((......))).....(((.(((((......))))).)))))))...))).... (-13.46 = -16.22 +   2.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:31 2006