| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,132,019 – 20,132,114 |
| Length | 95 |
| Max. P | 0.537385 |
| Location | 20,132,019 – 20,132,114 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.02 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -10.54 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20132019 95 + 22407834 AUAGAAAUGUAGCUACGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGUGUAAAAAAUCUAAUGCAGUAUGUUAAUACAUUAGAUCUGAA---UGUAU---------------------- (((....)))...((((((.((((.((((..........(((...((((.......))))...)))((((....))))))))..))))))---)))).---------------------- ( -15.90) >DroSec_CAF1 43277 94 + 1 ----AAAUGAAGCUUCGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGUGUAAAAAAUCUAGUGCGGCAUGUUUAUAAAUUAGAUCUGUAUAGUAUAU---------------------- ----...((((((...))))))(((((.((......)).))))).((((.......)))).((((.(((.(((((.....))))).)))...))))..---------------------- ( -14.90) >DroEre_CAF1 19972 95 + 1 AUAGAAAUGGAGCUACGUUUCAGAGUAAUUAAAUGAAAAUGCUCCGGGGCCUAA------AAUAUGGCAUGUUUAUACUUUAGAUGUGUA---UACAUAUUAUU---------------- .......((((((....(((((...........)))))..))))))..(((...------.....)))((((.(((((.......)))))---.))))......---------------- ( -23.30) >DroYak_CAF1 2241 115 + 1 AUAGAAAUGGAGCUGCGUUUCAGAGUAAUUAAA--AAAAUGCUCCGAGGGCUAAAUAUGUAAUAUGGCAUGUUUAUACAUUAGAUGUGUU---UACAUUACAUUAAGUCCGUUUUAUAUU ((((((.((((((....(((..((....))..)--))...)))))).(((((....(((((((..((((((((((.....))))))))))---...)))))))..))))).))))))... ( -30.30) >consensus AUAGAAAUGGAGCUACGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGGGCAAAAAAUCUAAUACGGCAUGUUUAUACAUUAGAUCUGUA___UACAU______________________ ...((((((......)))))).(((((.((......)).)))))......................(((((((((.....)))))))))............................... (-10.54 = -11.60 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:28 2006