Locus 7182

Sequence ID 2L_DroMel_CAF1
Location 20,127,833 – 20,127,945
Length 112
Max. P 0.551730
window11462

overview

Window 2

Location 20,127,833 – 20,127,945
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.98
Mean single sequence MFE -32.68
Consensus MFE -17.74
Energy contribution -19.34
Covariance contribution 1.60
Combinations/Pair 1.15
Mean z-score -2.12
Structure conservation index 0.54
SVM decision value 0.04
SVM RNA-class probability 0.551730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20127833 112 + 22407834
CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCAGCAGAA
..((.(((((...(((...(-------((((((((((....))))).))))))...)))((((((..((((((....)))((.((((......)))).))))-).))))))))))).)). ( -36.40)
>DroSec_CAF1 39201 111 + 1
CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCGGCAGG-
((.(((((.(((((((...(-------((((((((((....))))).))))))...))).))))(((..((((....))))..)))................-.......))))).)).- ( -35.40)
>DroAna_CAF1 1520 105 + 1
AUUCCUCAGAACUCAAUUCAGCAUGCUGGAUGCUGCCAAGUGGCAGUCAUUGGCUUUUGCAGU--------------UCGGAUUGUGCUUAACAAUUUGCAAAAUUUAGUGCUACCAAA-
...................(((((((..(..((((((....))))))..)..))(((((((..--------------...((((((.....)))))))))))))....)))))......- ( -28.90)
>DroSim_CAF1 2595 111 + 1
CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCACUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCAGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCGGCAGG-
.....(((((...(((...(-------(((((.((((....))))..))))))...)))((((((..(((.((....)).((.((((......)))).))))-).)))))))))))...- ( -32.20)
>DroEre_CAF1 15854 111 + 1
UUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGCCACCAGA-
......(((.((.......(-------((((((((((....))))).)))))).....)).(((((....(((....)))((.((((......)))).))..-.......)))))))).- ( -30.50)
>consensus
CUUCCGCUGCGCUCAAUUCC_______CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG_AUUUACUGGCAGCAGA_
.....(((((((.(.((((........((((((((((....))))).)))))((....))...................)))).).))...........(((......)))))))).... (-17.74 = -19.34 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:23 2006