| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,090,022 – 2,090,117 |
| Length | 95 |
| Max. P | 0.517438 |
| Location | 2,090,022 – 2,090,117 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.97 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -17.20 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2090022 95 - 22407834 UAAAUUUGGCCAGCGGAAAAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGC-A-------AAGAUGGAAAC .........(((((...........)).(((((.....(((.--.....)))((((((((.......)))))))).....)))))-.-------....))).... ( -25.10) >DroSec_CAF1 107069 94 - 1 UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG---------GAGAUGGAAAC ....((..(((((.....((((...((..((......))..)--)...))))((((((((.......))))))))..)))))..)---------).......... ( -28.70) >DroSim_CAF1 106905 94 - 1 UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG---------GAGAUGGAAGC ....((..(((((.....((((...((..((......))..)--)...))))((((((((.......))))))))..)))))..)---------).......... ( -28.70) >DroYak_CAF1 111536 95 - 1 UAAAUUUGGCCAGCGGAGGAGAACAGCG-CACCGAAAUGAGGAGCAGGACUCGUGUU-----UGGAGUCAGACACAACUGG----GAAAGCUGGGAAAUGGAAAA .........(((((....(((..(.((.-..((.......)).)).)..)))(((((-----((....)))))))......----....)))))........... ( -24.80) >consensus UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG__CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG_________GAGAUGGAAAC .......((((((.........................(((........)))((((((((.......))))))))..))))))...................... (-17.20 = -18.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:46 2006