Locus 7179

Sequence ID 2L_DroMel_CAF1
Location 20,096,753 – 20,096,854
Length 101
Max. P 0.738616
window11459

overview

Window 9

Location 20,096,753 – 20,096,854
Length 101
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.45
Mean single sequence MFE -29.48
Consensus MFE -20.01
Energy contribution -19.73
Covariance contribution -0.27
Combinations/Pair 1.23
Mean z-score -2.16
Structure conservation index 0.68
SVM decision value 0.44
SVM RNA-class probability 0.738616
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20096753 101 + 22407834
UCCUGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU
((..((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............))))..---)).......... ( -28.90)
>DroSec_CAF1 4119 101 + 1
UACGGUGGCCUGACAUUGAAUUCAGCCGUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU
..((((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............)))).)---)........... ( -30.60)
>DroSim_CAF1 4217 101 + 1
UCCGGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU
((.(((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............))))).---)).......... ( -30.50)
>DroEre_CAF1 4279 101 + 1
UCCGGUGGCCUGACAUUGAAUUCAGCCAAUGCAUUGAAUUCAAUCAGUCAGGAAUC----GUCGUCAAGGCCUCCAAGCUGUUUACUUCGCUC---GAUUCCCGUCUU
...(..((.(((((((((((((((((....))..))))))))))..)))))(((((----(.((....(((......)))........))..)---)))))))..).. ( -28.20)
>DroYak_CAF1 4143 101 + 1
UCCGGUGGCCUGACAUUGAAUUCAGUCAUUGCAUUGAAUUCAAUCAGUCAGGAACU----GUCGUCAAGGCCUCCAAGCUGUUUACUUCGUUC---AACUCCUGUUUU
...((.((((((((((((((((((((......))))))))))))((((.....)))----)..))).))))).))..................---............ ( -30.20)
>DroAna_CAF1 3540 103 + 1
-CCGGUGUCCUGACAUUGAAUUUAGGCACUCCGUUG---UCCGUCAGUCAGGGACGGACAGUCGUCAAGGCUU-CAGGUUCUUUAUUCAGAUUUCUAAUACCCGCUUU
-..(((((.((((....((((((((((.((.(((((---((((((.......))))))))).))...))))))-.)))))).....)))).......)))))...... ( -28.50)
>consensus
UCCGGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG____GUCAUCAAGGCCUCCAAGUUGUUUACUCCGCUC___GACUCCUGUUCU
..(((.((((((((((((((((((((....))..))))))))))..))))))........(((.....)))............................))))).... (-20.01 = -19.73 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:20 2006